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CHANGELOG.md

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Changelog

In Progress

Added

Changed

0.2.8

Added

-Export constants for loader type and max channels.

Changed

0.2.7

Added

  • Min/max, mean, standard deviation, median, IQR calculations directly from loaders.

Changed

0.2.6

Added

Changed

  • Don't minify es bundle.
  • Remove bioformats hack and update docs for container version.
  • Update zarr with new decoders.
  • Add tile-padding utility function for consistently sized tiles from Loader.getTile.
  • Fix #144 by padding uneven length tiles in StaticImageLayer.

0.2.5

Added

Changed

  • Address OMEXML discrepancy on StructuredAnnotations.

0.2.4

Added

Changed

  • Clean up dependencies.

0.2.3

Added

Changed

  • Add OME-TIFF to Covid-19 data description.
  • Clean up the docs.
  • Allow numeric indexing on OME-TIFF loader.

0.2.2

Added

  • Allow for headers with OME-TIFF.
  • Add COVID-19 Image to public demo.
  • Added getMetadata function to ZarrLoader and OMETiffLoader classes to enable Vitessce to obtain human-readable image layer metadata.

Changed

  • Change bioformats padding check.
  • Pad based on textures and not channel props.

0.2.1

Added

Changed

  • Allow for offsets in OMETiffLoader for bioformats6 pyramids.
  • Update geotiff off from Ilan's for to the official release.

0.2.0

Added

  • Remove threads.js and use WebWorkers for tiff decompression.
  • Add a dimension builder onto the tiff loader.
  • Add hover values for PictureInPictureViewer

Changed

  • Removed loader.serializeSelection and standardized loaderSelection for getTile and getRaster
  • Fix loaderSelection fetching on StaticImageLayer

0.1.7

Added

  • OMETiffLoader for reading ome-tiff files directly
  • Add scale bar (only for OMEXML for now)

Changed

0.1.6

Added

  • New classes for views/viewers
  • Zoom/pan lock buttons and linked views in demo

Changed

  • Refactored VivViewer to take in arbitrary views/layers
  • Check for loader.getRaster in VivViewerLayer before rendering StaticImageLayer base

0.1.5

Added

  • Add loaderSelection as prop for VivViewerLayer. This parameter is passed to loader.getTile and loader.getRaster in addtion to x, y and z.
  • Display warning for Safari users

Changed

  • Refactored demo to allow various channels and change selection
  • Use reducer for handling channel state in Demo
  • Use Material UI for demo components, and showcase all viv features
  • Update the IMAGE_RENDERING doc

0.1.4

Added

  • Add background image for nicer loading and temporary fix for minZoom issue
  • Add getRaster to TiffPyramidLoader
  • Picture-in-picture overview layer

Changed

  • Generalize colormaps to multichannel maps.
  • Add flags to check for loader change and rerender.
  • Remove minZoom from loaders and make loaders provide onTileError.
  • Wrap channelData in StaticImageLayer in Promise.
  • Allow no viewportId parameter

0.1.3

Added

Changed

0.1.2

Changed

  • Fixed shaders' if-then
  • Changed UMD build name to be valid
  • Provide default args for scale and isRgb in createZarrPyramid.
  • Remove unneeded attributes from TiffPyramidLoader.

0.1.1

Changed

  • Update deck.gl build
  • Bump zarr.js to v0.2.3
  • Set raster selection on data loader class

Added

  • Add test:watch to npm scripts.

0.1.0

Changed

  • Clean up shaders
  • Extracted data utils to loaders and refactored demo

Added

  • StaticImageLayer added and exported for viewing non-tiled images
  • Single channel colormaps for tiled and static
  • Expose opacity and visibility
  • Testing for layers added
  • More automated build process

0.0.8

Changed

  • Update build process to use rollup

0.0.7

Changed

  • Remove sort

0.0.6

Added

  • New zarr API and standardize data utilities

Changed

  • Fix brightness from channel toggling
  • Removed Microscopy from export names
  • Consolidated data access logic to data-utils
  • Refactored microscopy-viewer-layer-base.js
  • Fix toggling defaults for sliders and colors when channels are off.

0.0.5

Added

  • Resolve linting
  • Update demo switching
  • Add channel-toggling
  • Simplify API for TIFF by inferring metadata from file
  • Clean up vertex shader

Changed

  • Fixed no-unused-expressions

v0.0.4

Added

  • Anti-aliasing for the borders implemented.

Changed

  • Prettier on CI will now actually scan all files.

v0.0.3

Added

  • Automate Deployment
  • Add slider names corresponding to metadata in demo
  • Linting and Travis integration. Apply prettier to everything. (Ignore most ESLint errors for now

Changed

  • Fix no-extraneous-dependencies
  • Fix global-require