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The EBI has published a Unified Human Gastrointestinal Genome (UHGG) catalogue which includes a taxonomy of their genome clusters. When I try to load it with taxonomy it unfortunately fails. I wonder if the problem lies with taxonomy or EBI providing a bad format.
Additionally, taxonomy fails to load the GTDB in Newick format. I have attached different versions
(gtdb.zip) that I can visualize with the ETE toolkit. Sample code:
The EBI has published a Unified Human Gastrointestinal Genome (UHGG) catalogue which includes a taxonomy of their genome clusters. When I try to load it with taxonomy it unfortunately fails. I wonder if the problem lies with taxonomy or EBI providing a bad format.
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