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specify number of cores for the whole pipeline and individual tasks #8

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golobor opened this issue Apr 17, 2017 · 1 comment
Open

specify number of cores for the whole pipeline and individual tasks #8

golobor opened this issue Apr 17, 2017 · 1 comment

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@golobor
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golobor commented Apr 17, 2017

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@Phlya
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Phlya commented Mar 27, 2023

reasonable threads are specified for all rules (where they are not, multithreading doesn't make sense).
For the whole pipeline you just specify it in the CLI when running, eg snakemake --cores 40

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@golobor @Phlya