utils.py

import numpy as np
import tensorflow as tf
import random
from mpi_util import mpi_moments


def fc(x, scope, nh, *, init_scale=1.0, init_bias=0.0):
    with tf.variable_scope(scope):
        nin = x.get_shape()[1].value
        w = tf.get_variable("w", [nin, nh], initializer=ortho_init(init_scale))
        b = tf.get_variable("b", [nh], initializer=tf.constant_initializer(init_bias))
        return tf.matmul(x, w)+b

def conv(x, scope, *, nf, rf, stride, pad='VALID', init_scale=1.0, data_format='NHWC', one_dim_bias=False):
    if data_format == 'NHWC':
        channel_ax = 3
        strides = [1, stride, stride, 1]
        bshape = [1, 1, 1, nf]
    elif data_format == 'NCHW':
        channel_ax = 1
        strides = [1, 1, stride, stride]
        bshape = [1, nf, 1, 1]
    else:
        raise NotImplementedError
    bias_var_shape = [nf] if one_dim_bias else [1, nf, 1, 1]
    nin = x.get_shape()[channel_ax].value
    wshape = [rf, rf, nin, nf]
    with tf.variable_scope(scope):
        w = tf.get_variable("w", wshape, initializer=ortho_init(init_scale))
        b = tf.get_variable("b", bias_var_shape, initializer=tf.constant_initializer(0.0))
        if not one_dim_bias and data_format == 'NHWC':
            b = tf.reshape(b, bshape)
        return b + tf.nn.conv2d(x, w, strides=strides, padding=pad, data_format=data_format)

def ortho_init(scale=1.0):
    def _ortho_init(shape, dtype, partition_info=None):
        #lasagne ortho init for tf
        shape = tuple(shape)
        if len(shape) == 2:
            flat_shape = shape
        elif len(shape) == 4: # assumes NHWC
            flat_shape = (np.prod(shape[:-1]), shape[-1])
        else:
            raise NotImplementedError
        a = np.random.normal(0.0, 1.0, flat_shape)
        u, _, v = np.linalg.svd(a, full_matrices=False)
        q = u if u.shape == flat_shape else v # pick the one with the correct shape
        q = q.reshape(shape)
        return (scale * q[:shape[0], :shape[1]]).astype(np.float32)
    return _ortho_init

def tile_images(array, n_cols=None, max_images=None, div=1):
    if max_images is not None:
        array = array[:max_images]
    if len(array.shape) == 4 and array.shape[3] == 1:
        array = array[:, :, :, 0]
    assert len(array.shape) in [3, 4], "wrong number of dimensions - shape {}".format(array.shape)
    if len(array.shape) == 4:
        assert array.shape[3] == 3, "wrong number of channels- shape {}".format(array.shape)
    if n_cols is None:
        n_cols = max(int(np.sqrt(array.shape[0])) // div * div, div)
    n_rows = int(np.ceil(float(array.shape[0]) / n_cols))

    def cell(i, j):
        ind = i * n_cols + j
        return array[ind] if ind < array.shape[0] else np.zeros(array[0].shape)

    def row(i):
        return np.concatenate([cell(i, j) for j in range(n_cols)], axis=1)

    return np.concatenate([row(i) for i in range(n_rows)], axis=0)


def set_global_seeds(i):
    try:
        import tensorflow as tf
    except ImportError:
        pass
    else:
        from mpi4py import MPI
        tf.set_random_seed(i)
    np.random.seed(i)
    random.seed(i)


def explained_variance_non_mpi(ypred,y):
    """
    Computes fraction of variance that ypred explains about y.
    Returns 1 - Var[y-ypred] / Var[y]

    interpretation:
        ev=0  =>  might as well have predicted zero
        ev=1  =>  perfect prediction
        ev<0  =>  worse than just predicting zero

    """
    assert y.ndim == 1 and ypred.ndim == 1
    vary = np.var(y)
    return np.nan if vary==0 else 1 - np.var(y-ypred)/vary

def mpi_var(x):
    return mpi_moments(x)[1]**2

def explained_variance(ypred,y):
    """
    Computes fraction of variance that ypred explains about y.
    Returns 1 - Var[y-ypred] / Var[y]

    interpretation:
        ev=0  =>  might as well have predicted zero
        ev=1  =>  perfect prediction
        ev<0  =>  worse than just predicting zero

    """
    assert y.ndim == 1 and ypred.ndim == 1
    vary = mpi_var(y)
    return np.nan if vary==0 else 1 - mpi_var(y-ypred)/vary