| Organism | Version | Reference | PMID |
|---|---|---|---|
| Acinetobacter baumannii | AbyMBEL891 | Kim et al. | 20094653 |
| Acinetobacter baylyi | iAbaylyiV4 | Durot et al. | 18840283 |
| Aspergillus nidulans | iHD666 | David et al. | 18405346 |
| Acinetobacter baylyi | iAbaylyiV4 | Durot et al. | 18840283 |
| Acinetobacter baylyi | iAbaylyiV4 | 18840283 | |
| Acinetobacter baylyi | iAbaylyiV4 | 18840283 | |
| Arabidopsis thaliana | AraGEM | de Oliveira Dal'Molin et al. | 20044452 |
| Arabidopsis thaliana | iRS1597 | Saha et al. | 21755001 |
| Aspergillus niger | iMA871 | Andersen et al. | 18364712 |
| Aspergillus oryzae | iWV1314 | Vongsangnak et al. | 18500999 |
| Buchnera aphidicola | iGT196 | Thomas et al. | 19232131 |
| Bacillus subtilis | iBsu1103 | Henry et al. | 19555510 |
| Bacillus subtilis | iYO844 | Oh et al. | 17573341 |
| Burkholderia cenocepacia | iKF1028 | Fang et al. | 21609491 |
| Chlamydomonas reinhardtii | iRC1080 | Chang et al. | 21811229 |
| Clostridium acetobutylicum | iJL432 | Lee et al. | 18758767 |
| Clostridium acetobutylicum | iCac802 | Senger and Papoutsakis | 18767192 |
| Corynebacterium glutamicum | iKK446 | Kjeldsen and Nielsen | 18985611 |
| Corynebacterium glutamicum | iYS277 | Shinfuku et al. | 19646286 |
| Clostridium beijerinckii | iCB925 | Milne et al. | 21846360 |
| Clostridium thermocellum | iSR432 | Roberts et al. | 20307315 |
| Chromohalobacter salexigens | iOA584 | Ates et al. | 21251315 |
| Cryptosporidium hominis | iNV213 | Vanee et al. | 20491062 |
| Dehalococcoides ethenogenes | iAI549 | Islam et al. | 20811585 |
| Escherichia coli | iJO1366 | Orth et al. | 21988831 |
| Escherichia coli | iAF1260 | Feist et al. | 17593909 |
| Escherichia coli | iCA1273 | Archer et al. | 21208457 |
| Escherichia coli | iJR904 | Reed et al. | 12952533 |
| Escherichia coli | textbook | ||
| Francisella tularensis | iRS605 | Raghunathan et al. | 20731870 |
| Geobacter metallireducens | iJS747 | Sun et al. | 19175927 |
| Geobacter sulfurreducens | iRM588 | Mahadevan et al. | 16461711 |
| Halobacterium salinarum | Gonzalez et al. | 18213408 | |
| Haemophilus influenzae | iCS400 | Schilling and Palsson | 10716908 |
| Helicobacter pylori | iCS291 | Schilling et al. | |
| Helicobacter pylori | iIT341 | Thiele et al. | 16077130 |
| Homo sapiens | Recon 1 | Duarte et al. | 17267599 |
| Ketogulonicigenium vulgare | iWZ663 | Zou et al. | 12142428 |
| Klebsiella pneumoniae | iYL1228 | Liao et al. | 21296962 |
| Lactococcus lactis | iAO358 | Oliveira et al. | 15982422 |
| Leishmania major | iAC560 | Chavali et al. | 18364711 |
| Lactobacillus plantarum | iBT721 | Teusink et al. | 17062565 |
| Mannheimia succiniciproducens | iSH335 | Hong et al. | 15378067 |
| Mannheimia succiniciproducens | iTY425 | Kim et al. | 17405177 |
| Methanosarcina acetivorans | iMB745 | Benedict et al. | 22139506 |
| Methanosarcina acetivorans | iVS941 | Satish Kumar et al. | 21324125 |
| Mus musculus | Sheikh et al. | 15903248 | |
| Methanosarcina barkeri | iAF692 | Feist et al. | 16738551 |
| Mus musculus | iMM1415 | Sigurdsson et al. | 20959003 |
| Mus musculus | iSS724 | Selvarasu et al. | 20024077 |
| Mus musculus | mus_musculus | Quek and Nielsen | 19425150 |
| Mycobacterium tuberculosis | GSMN-TB | Beste et al. | 17521419 |
| Mycobacterium tuberculosis | iNJ661 | Jamshidi and Palsson | 17555602 |
| Mycobacterium tuberculosis | iNJ661m | Fang et al. | 21092312 |
| Mycoplasma genitalium | iPS189 | Suthers et al. | 19214212 |
| Neisseria meningitidis | iGB555 | Baart et al. | 17617894 |
| Natronomonas pharaonis | iOG654 | Gonzalez et al. | 20543878 |
| Pichia pastoris | PpaMBEL1254 | Sohn et al. | 20503221 |
| Plasmodium falciparum | PlasmoNet | Huthmacher et al. | 20807400 |
| Pichia pastoris | iLC915 | Caspeta et al. | 22472172 |
| Pichia pastoris | iPP668 | Chung et al. | 20594333 |
| Pichia stipitis | iSS884 | Caspeta et al. | 22472172 |
| Plasmodium falciparum | iTH366 | Plata et al. | 20823846 |
| Porphyromonas gingivalis | iVM679 | Mazumdar et al. | 18931137 |
| Pseudomonas aeruginosa | iMO1056 | Oberhardt et al. | 18192387 |
| Pseudomonas putida | iJN746 | Nogales et al. | 18793442 |
| Pseudomonas putida | iJP815 | Puchalka et al. | 18974823 |
| Pseudomonas putida | PpuMBEL1071 | Sohn et al. | 20540110 |
| Rhizobium etli | iOR363 | Resendis-Antonio et al. | 17922569 |
| Rhodobacter sphaeroides | iRsp1095 | Imam et al. | 21777427 |
| Rhodoferax ferrireducens | iCR744 | Risso et al. | 19772637 |
| Saccharomyces cerevisiae | iFF708 | Forster et al. | 12566402 |
| Staphylococcus aureus | iMH551 | Heinemann et al. | 16155945 |
| Staphylococcus aureus | S_aureus | Lee et al. | 19376871 |
| Saccharomyces cerevisiae | iMM904 | Mo et al. | 19321003 |
| Saccharomyces cerevisiae | iND750 | Duarte et al. | 15197165 |
| Saccharomyces cerevisiae | iLL672 | Kuepfer et al. | 16204195 |
| Saccharomyces cerevisiae | iIN800 | Nookaew et al. | 18687109 |
| Saccharomyces cerevisiae | iMH805/775 | Herrgård et al. | 18846089 |
| Saccharomyces pombe | SpoMBEL1693 | Sohn et al. | 22631437 |
| Streptococcus thermophilus | iMP429 | Pastink et al. | 19346354 |
| Salmonella typhimurium | iMA945 | AbuOun et al. | 19690172 |
| Salmonella typhimurium | iRR1083 | Raghunathan et al. | 19356237 |
| Salmonella typhimurium | STM_v1_0 | Thiele et al. | 21244678 |
| Scheffersomyces stipitis | iTL885 | Liu et al. | 22998943 |
| Shewanella oneidensis | iSO783 | Pinchuck et al. | 20589080 |
| Synechocystis sp. PCC6803 | iPF633 | Fu | |
| Staphylococcus aureus | iSB619 | Becker and Palsson | 15752426 |
| Streptomyces coelicolor | iIB711 | Borodina et al. | 15930493 |
| Streptomyces coelicolor | S_coilicolor | Alam et al. | 20338070 |
| Synechocystis sp. PCC6803 | iJN678 | Nogales et al. | 22308420 |
| Synechocystis sp. PCC6803 | iSyn669 | Montagud et al. | 21083885 |
| Thermotoga maritima | T_Maritima | Zhang et al. | 19762644 |
| Vibrio vulnificus | VvuMBEL943 | Kim et al. | 21245845 |
| Yersinia pestis | iAN818m | Navid and Almaas | 19396373 |
| Zea mays | iRS1563 | Saha et al. | 21755001 |
| Zymomonas mobilis | ZmobMBEL601 | Lee et al. | 21092328 |
| Zymomonas mobilis | iZM363 | Widiastuti et al. | 20967753 |