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Include more debugging info #2

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rcannood opened this issue Jan 10, 2025 · 0 comments
Open

Include more debugging info #2

rcannood opened this issue Jan 10, 2025 · 0 comments

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@rcannood
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From openproblems-bio/task_batch_integration#22:

Debugging nf-tower runs

The actual benchmark is run on the nf-tower platform.
You can find runs related to the batch integration by filtering for label:task_batch_integration, selecting a specific run and browsing the outputs.

For debugging purposes, you can download the output of a task run from nf-tower following command:

common/scripts/fetch_task_run \
  --input s3://openproblems-work/work/<process ID>\
  --output temp_output

You can find the process ID under the "Work directory" section of the Task details.

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