Use another genome/annotation?

[dining-philosopher]

Hello!

I wonder can i run isovar against some other genome and/or annotation file? Our pipeline uses hg38.analysisset.fa and gencode.v31.chr_patch_hapl_scaff.annotation.gtf, but isovar uses Homo_sapiens.GRCh38.*.fa.gz and Homo_sapiens.GRCh38.102.gtf.gz which it downloads by itself, which results at least in some inconsistencies in gene names.

Is it possible to set genome/annotation from python? It should be obviously so cos the command line isovar accepts genome parameter, but your readme says nothing about this.

Can i read the list of genome names accepted as the mentioned parameter?

Thanks in advance.