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Make phasing of multiple variants on a read explicit (group reads into phase groups) #72

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ihodes opened this issue Dec 13, 2016 · 4 comments
Open

Make phasing of multiple variants on a read explicit (group reads into phase groups) #72

ihodes opened this issue Dec 13, 2016 · 4 comments
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@ihodes
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ihodes commented Dec 13, 2016

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ihodes commented Dec 13, 2016

https://www.dropbox.com/s/driavq5spauad64/Screenshot%202016-12-13%2015.47.17.png?dl=0

@iskandr iskandr changed the title We need to handle multiple variants on a read; phasing things better Make phasing of multiple variants on a read explicit (group reads into phase groups) Dec 13, 2016
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iskandr commented Dec 13, 2016

Instead of having a variant associated with protein sequences we should instead have something like PhaseGroup(somatic_variants, germline_variants)

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iskandr commented Dec 13, 2016

Combining variants into phase groups was part of the original plan: #3

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ihodes commented Dec 13, 2016

(This would likely involve taking germline variants as input.)

@iskandr iskandr mentioned this issue May 16, 2019
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