README.md

Nicoletti et al. 2019 C. elegans neuron models

These are the model scripts for the Nicoletti et al. 2019: Biophysical modeling of C. elegans neurons: Single ion currents and whole-cell dynamics of AWCon and RMD.

Original XPP scripts

The XPP files for the 2 cells are:

• RMD.ode
• AWC.ode

NeuroML conversion of the cells

NeuroML compliant versions of the cells and all the ion channels can be found in this folder:

• RMD.cell.nml
• AWCon.cell.nml

These cell models can be run with pyNeuroML:

    pynml LEMS_Sim_Fig4C_AWCon.xml

    pynml Fig7B_RMD.net.nml

and will produce the following:

These cells have been tested against the original XPP versions, see regenerateAndTest.sh.