Repositories list

• curation_tool

  Public
  small crystal tool to simplify staging of files for the Sanger GRIT team

  jiracrystal-langcommandlinetool

  Crystal

  •

  MIT License

  •0•1•0•0•Updated Dec 9, 2024Dec 9, 2024

• sponge_annotations

  Public
  collected annotations of the ASG porifera

  Ruby

  •

  MIT License

  •0•1•0•0•Updated Dec 2, 2024Dec 2, 2024

• other_annotations

  Public
  covering annotation of clades with very small numbers of sequences species

  MIT License

  •0•0•0•0•Updated Dec 2, 2024Dec 2, 2024

• BLAST-scripts

  Public
  wrapper to parse out BTK ids and blast them vs a blast server

  Crystal

  •

  MIT License

  •0•0•0•0•Updated Oct 23, 2024Oct 23, 2024

• gx_pipeline

  Public
  wrapper for the NCBI GX pipeline

  Python

  •1•0•0•0•Updated Jul 22, 2024Jul 22, 2024

• sort_fasta

  Public
  small tool for custom sorting of fasta sequences

  Ruby

  •

  MIT License

  •0•0•0•0•Updated Jul 4, 2024Jul 4, 2024

• dot

  Public
  Dot: An interactive dot plot viewer for comparative genomics

  JavaScript

  •

  MIT License

  •18•0•0•0•Updated Apr 5, 2024Apr 5, 2024

• cnidaria_annotations

  Public
  collected annotations of the ASG cnidaria

  MIT License

  •0•0•0•0•Updated Dec 18, 2023Dec 18, 2023

• gene_annotation_pipeline

  Public archive
  code to run STAR+Braker at the Sanger

  Shell

  •

  Apache License 2.0

  •0•0•0•0•Updated Oct 6, 2023Oct 6, 2023

• grit-rename

  Public
  tiny tool to rename ids in TPF/AGP/FASTA files

  Crystal

  •

  MIT License

  •0•0•0•0•Updated Jan 26, 2023Jan 26, 2023

• annotation_stats

  Public
  Python

  •0•0•0•0•Updated Oct 24, 2022Oct 24, 2022

• ASG_annotation_course

  Public
  HTML

  •0•0•0•0•Updated Oct 22, 2021Oct 22, 2021