Repositories list

• miscHelpers

  Public
  Miscellaneous helper functions for common tasks. A hodgepodge of stuff that doesn't fit into other packages.

  R

  •0•0•0•0•Updated Oct 14, 2024Oct 14, 2024

• WGCNAtools

  Public
  R

  •0•1•0•0•Updated Oct 8, 2024Oct 8, 2024

• primary_T_MPRA

  Public
  Jupyter Notebook

  •1•0•0•0•Updated Oct 3, 2024Oct 3, 2024

• kubespray

  Public
  Deploy a Production Ready Kubernetes Cluster

  Jinja

  •

  Apache License 2.0

  •6.5k•0•0•1•Updated Sep 30, 2024Sep 30, 2024

• P589-1_Cerosaletti_Chen_foreign_autoreactive_CD4_Tcell_10X

  Public
  P589-1, a 10X GEM-X XLEAP investigation of CD4 Tcells in T1D and HC subjects with a CITEseq panel

  HTML

  •0•0•0•0•Updated Aug 29, 2024Aug 29, 2024

• 20240310_mpra_analysis

  Public
  HTML

  •0•0•0•0•Updated Aug 21, 2024Aug 21, 2024

• IL2MuteinIncreasesTregSuppressionOfDCs

  Public
  Code for analysis associated with the manuscript "An IL-2 mutein increases regulatory T cell suppression of dendritic cells via IL-10 and CTLA-4 to promote T cell anergy"

  0•0•0•0•Updated Aug 13, 2024Aug 13, 2024

• RNAseQC

  Public
  Tools for conducting QC on RNAseq data

  R

  •4•4•0•0•Updated Aug 7, 2024Aug 7, 2024

• P435_Tcell_differentiation_Khor

  Public
  HTML

  •0•0•0•0•Updated Jun 27, 2024Jun 27, 2024

• meraki2azure_ad

  Public
  This app allows you to use Azure Active Directory services to authenticate users on a Meraki network

  JavaScript

  •

  MIT License

  •3•0•0•0•Updated Jun 26, 2024Jun 26, 2024

• briDiscovr

  Public
  Distribution analysis across clusters of a parent population overlaid with a rare subpopulation (DISCOV-R)

  R

  •

  Other

  •1•0•1•0•Updated Jun 12, 2024Jun 12, 2024

• Waterman_Hamerman_SLE_autoantibodies_pDCs_2024

  Public
  Code to replicate analyses and visualizations in Waterman et al. 2024, "Lupus IgA1 autoantibodies synergize with IgG to enhance pDC responses to RNA-containing immune complexes"

  0•0•0•0•Updated May 24, 2024May 24, 2024

• bioinformaticsChallengeCourse2022

  Public
  Repository for storing information and data from the Bioinformatics 2022 Autumn Challenge Course

  R

  •0•4•0•0•Updated May 15, 2024May 15, 2024

• Germline-like-TCR-alpha-chains-shared-between-autoreactive-T-cells-in-blood-and-pancreas

  Public
  R

  •0•1•0•0•Updated May 14, 2024May 14, 2024

• Data_Carpentry_Workshop_2024

  Public
  R coding bootcamp for Researchers are BRI

  HTML

  •

  Other

  •508•0•0•0•Updated Feb 12, 2024Feb 12, 2024

• Verma_Harrison_SFB_B_cells_2024

  Public
  Repository containing code for analyses used in the manuscript by Verma et al., "Antigen-level resolution of commensal-specific B cell responses enabled by phage-display screening and B cell tetramers", https://www.biorxiv.org/content/10.1101/2023.10.13.562275v1

  Shell

  •0•0•0•0•Updated Jan 2, 2024Jan 2, 2024

• CpeptideTools

  Public
  R package with functions for handling C-peptide data from MMTTs and OGTTs

  R

  •0•0•0•0•Updated Dec 20, 2023Dec 20, 2023

• Witkop_T1DAL_2023

  Public
  Code generated to analyze data and generated figures presented in the Witkop et al., 2023 manuscript using data from the T1DAL trial.

  R

  •0•0•0•0•Updated Nov 6, 2023Nov 6, 2023

• Islet-autoreactive-CD4-T-cells-are-linked-with-response-to-alefacept-in-type-1-diabetes

  Public
  1•0•0•0•Updated Oct 19, 2023Oct 19, 2023

• bripipetools

  Public
  tools for managing genomics pipelines at BRI

  HTML

  •

  MIT License

  •0•1•17•0•Updated Oct 17, 2023Oct 17, 2023

• Alveolar_Macrophage_Subsets_ARDS

  Public
  Code repository for Morell et al. study of BAL in ARDS and non-ARDS intubated patients.

  0•0•0•0•Updated Oct 10, 2023Oct 10, 2023

• TIP_RA_cross_sectional

  Public
  Code for analysis of cross-sectional data from the TIP-RA project

  0•0•0•0•Updated Oct 9, 2023Oct 9, 2023

• qr_t1d_metric

  Public
  SAS

  •0•0•0•0•Updated Sep 1, 2023Sep 1, 2023

• netR

  Public
  Tools for network analysis

  R

  •

  GNU General Public License v3.0

  •0•1•0•0•Updated Jun 16, 2023Jun 16, 2023

• Peds_Asthma_Modules

  Public
  Pediatrics Asthma Module Analysis

  2•3•0•0•Updated Jun 7, 2023Jun 7, 2023

• r_pkg_check_GHActions

  Public
  Template for setting automated checks for R package using GitHub Actions

  R

  •0•0•0•0•Updated Aug 12, 2022Aug 12, 2022

• DGETools

  Public
  Differential Gene Expression Analysis Tools

  R

  •0•1•0•0•Updated Jun 30, 2022Jun 30, 2022

• Data_Carpentry_Workshop_2022

  Public
  Repository to hold code for the 2022 Intro to R Data Carpentry workshop hosted by the BRI Bioinformatics Team

  R

  •0•0•0•0•Updated Jun 23, 2022Jun 23, 2022

• P356_TSLPR_ST2_Treg

  Public
  0•0•0•0•Updated Apr 19, 2022Apr 19, 2022

• tcrGraph

  Public
  R

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Mar 22, 2022Mar 22, 2022