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    17 repositories

    • V4SDB_Winter_School_2025

      Public
      Training materials for V4SDB Student Winter School, 28th-31st January 2025 at ELTE Eötvös Loránd University in Budapest, Hungary
      0•1•0•0•Updated Jan 14, 2025Jan 14, 2025

    • CellTracksColab

      Public
      A platform for compiling, analyzing, and exploring tracking data
      Jupyter Notebook
      •
      MIT License
      •4•42•6•1•Updated Jan 8, 2025Jan 8, 2025

    • I2K_2024

      Public
      I2K 2024 workshop materials for "Object Tracking and track analysis using TrackMate and CellTracksColab"
      GNU General Public License v3.0
      •0•3•0•0•Updated Jan 8, 2025Jan 8, 2025

    • Fast4DReg

      Public
      Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/or z-directions.
      Java
      •
      MIT License
      •4•39•1•0•Updated Dec 16, 2024Dec 16, 2024

    • PIV_4_xCELLigence

      Public
      PIV analysis for xCELLigence timelapse image data
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Dec 13, 2024Dec 13, 2024

    • Plot-Stats

      Public
      Jupiter notebooks created to help us plot and analyse our datasets
      Jupyter Notebook
      •
      MIT License
      •0•4•1•0•Updated Nov 22, 2024Nov 22, 2024

    • .github

      Public
      1•0•0•0•Updated Nov 11, 2024Nov 11, 2024

    • Course-Image-analysis-2024

      Public
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Oct 31, 2024Oct 31, 2024

    • PDAC_DL

      Public
      GitHub page associated with the publication "Fast label-free live imaging reveals key roles of flow dynamics and CD44-HA interaction in cancer cell arrest on endothelial monolayers"
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•2•0•0•Updated Oct 9, 2024Oct 9, 2024

    • Datasets

      Public
      List of openly available dataset generated by our lab
      MIT License
      •0•9•0•0•Updated Oct 4, 2024Oct 4, 2024

    • AdhesionFlowSimulator

      Public
      AdhesionFlowSimulator models cell adhesion dynamics under flow, simulating interactions between cells and surfaces. It allows for the analysis of cell attachment across different flow speeds, adhesion strengths, and receptor patterns.
      Jupyter Notebook
      •0•0•0•0•Updated Oct 1, 2024Oct 1, 2024

    • celltrackscolab-viewer

      Public
      A simple Napari plugin to visualize tracks stored in the CellTracksColab format
      Python
      •
      MIT License
      •0•0•0•0•Updated Sep 9, 2024Sep 9, 2024

    • GithubToText

      Public
      Code to automatically copy a chosen Github repo into a text file
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated Sep 2, 2024Sep 2, 2024

    • Fiji_macros

      Public
      A small collection of useful macro for Fiji
      ImageJ Macro
      •
      MIT License
      •1•0•0•0•Updated Aug 27, 2024Aug 27, 2024

    • FiloMAP

      Public
      ImageJ and R scripts used to map the localisation of proteins whithin filopodia and generate filopodia maps.
      R
      •
      MIT License
      •0•3•0•0•Updated May 28, 2024May 28, 2024

    • FiloQuant

      Public
      Filopodia quantification plugin for ImageJ
      ImageJ Macro
      •
      MIT License
      •0•2•0•0•Updated May 28, 2024May 28, 2024

    • ModelZoo

      Public
      A web page listing our publicly available Deep Learning training datasets and models
      MIT License
      •0•1•0•0•Updated Jan 28, 2024Jan 28, 2024