FASTGenomics

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13 repositories

image-texlive
Public
Texlive Docker Image
Dockerfile
•0•0•0•0•Updated Nov 3, 2023Nov 3, 2023
jupyterswarmtemplate
Public
template for juypterswarm
Jupyter Notebook
•0•0•0•0•Updated Dec 13, 2021Dec 13, 2021
analysis-fastresearch-python
Public
Intro notebook for new python analyses on fastresearch.
hacktoberfest
Jupyter Notebook
•0•0•0•0•Updated Oct 26, 2021Oct 26, 2021
analysis-fastresearch-R
Public
Intro notebook for R analyses on fastresearch
hacktoberfest
Jupyter Notebook
•0•0•0•0•Updated Oct 26, 2021Oct 26, 2021
image-jupyter-base
Public
Base image for the jupyter session
docker hacktoberfest fastgenomics fastgenomics-image jupyter
Python
•
Other
•1•0•0•1•Updated Sep 28, 2021Sep 28, 2021
image-shiny-base
Public
Base Image for R Shiny analyses on FASTGenomics
docker template shiny fastgenomics fastgenomics-image
R
•
MIT License
•0•1•0•0•Updated Aug 30, 2021Aug 30, 2021
fgread-py
Public
Python readers for different data formats for FASTGenomics.
single-cell hacktoberfest python-module fastgenomics scanpy fastgenomics-module python
Python
•
MIT License
•1•1•0•1•Updated Aug 13, 2021Aug 13, 2021
fgread-r
Public
R readers for different data formats for FASTGenomics.
r single-cell fastgenomics fastgenomics-module seurat
R
•
MIT License
•0•1•0•0•Updated Mar 4, 2021Mar 4, 2021
analysis_empty_scanpy_rpy2
Public
Advanced scanpy environment with R support (rpy2)
python r jupyter-notebook fastgenomics scanpy fastgenomics-analysis rpy2
Jupyter Notebook
•0•0•0•0•Updated Aug 13, 2020Aug 13, 2020
analysis_empty_seurat
Public
r jupyter-notebook single-cell seurat fastgenomics fastgenomics-analysis
Jupyter Notebook
•0•0•0•0•Updated Aug 13, 2020Aug 13, 2020
analysis_empty_scanpy
Public
python jupyter-notebook single-cell fastgenomics scanpy fastgenomics-analysis
Jupyter Notebook
•0•0•0•0•Updated Aug 13, 2020Aug 13, 2020
test-data
Public
Directory with data sets used for testing various notebooks outside of FG
single-cell testdata fastgenomics fastgenomics-dev
1•0•0•0•Updated Jun 25, 2020Jun 25, 2020
test-environment
Public
Documentation how to run FASTGenomics analysis on a local machine for testing
testing docker jupyter single-cell fastgenomics fastgenomics-dev
MIT License
•0•1•0•0•Updated Feb 11, 2020Feb 11, 2020