Genentech

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112 repositories

phase1b
Public
R
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Other
•2•5•16•0•Updated Mar 11, 2025Mar 11, 2025
gReLU
Public
gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.
Python
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MIT License
•30•251•22•5•Updated Mar 10, 2025Mar 10, 2025
gReLU-applications
Public
Jupyter Notebook
•0•0•0•0•Updated Mar 6, 2025Mar 6, 2025
Islander
Public
Jupyter Notebook
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MIT License
•0•10•1•0•Updated Mar 6, 2025Mar 6, 2025
PerturbQA
Public
Python
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Other
•0•5•0•0•Updated Mar 4, 2025Mar 4, 2025
beignet
Public
A standard library for biological research.
Python
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MIT License
•5•21•15•17•Updated Mar 2, 2025Mar 2, 2025
jmpost
Public
R
•4•17•56•1•Updated Mar 1, 2025Mar 1, 2025
topological_PRM_for_lungHRCT
Public
Lung image analysis pipeline for topological PRM maps
topological-data-analysis lung copd minkowski-functionals hrct parametric-response-mapping
Python
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Apache License 2.0
•0•2•0•0•Updated Feb 27, 2025Feb 27, 2025
rd2markdown
Public
R
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Other
•0•7•5•0•Updated Feb 27, 2025Feb 27, 2025
psborrow2
Public
psborrow2: Bayesian Dynamic Borrowing Simulation Study and Analysis
simulation-study bayesian-dynamic-borrowing psborrow2 r
R
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Other
•2•18•6•2•Updated Feb 26, 2025Feb 26, 2025
SaludLibrary
Public
Python
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Other
•1•0•0•0•Updated Feb 21, 2025Feb 21, 2025
BayesERtools
Public
R
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Other
•1•2•2•0•Updated Feb 21, 2025Feb 21, 2025
genentech.r-universe.dev
Public
1•0•0•0•Updated Feb 19, 2025Feb 19, 2025
Teal4Real
Public
Teal4Real - use the Teal clinical trial reporting software with Real-world Data or any other one-row-per-patient dataset (not ADaM format)
R
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MIT License
•0•3•0•0•Updated Feb 19, 2025Feb 19, 2025
psborrow
Public
An R package for Bayesian Dynamic Borrowing. Check out the successor psborrow2: https://github.com/Genentech/psborrow2
HTML
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Other
•3•0•1•1•Updated Feb 19, 2025Feb 19, 2025
spex_ms_job_manager
Public
Python
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Other
•0•0•0•0•Updated Feb 18, 2025Feb 18, 2025
scimilarity
Public
A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to represent new studies without additional training.
Python
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Other
•4•178•18•0•Updated Feb 18, 2025Feb 18, 2025
BayesERbook
Public
R
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Other
•1•1•3•1•Updated Feb 17, 2025Feb 17, 2025
stats4phc
Public
Performance evaluation for the prognostic value of predictive models intended to support personalized healthcare through predictiveness curves and positive / negative predictive values.
R
•1•1•0•0•Updated Feb 17, 2025Feb 17, 2025
covtracer
Public
Tools for contextualizing tests, built using covr test traces.
R
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Other
•4•21•7•0•Updated Feb 13, 2025Feb 13, 2025
checked
Public
batch R CMD check management
r checks revdeps
R
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Other
•1•7•11•1•Updated Feb 12, 2025Feb 12, 2025
spex_spatial_transcriptomics
Public
Jupyter Notebook
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Other
•0•0•0•0•Updated Feb 3, 2025Feb 3, 2025
spex_segmentation
Public
Jupyter Notebook
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Other
•0•0•0•0•Updated Jan 23, 2025Jan 23, 2025
spex_backend
Public
Python
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Other
•0•0•0•0•Updated Jan 23, 2025Jan 23, 2025
pysummaries
Public
Generate beautiful summary tables from pandas dataframes
python pandas-dataframe pandas tables clinical-research summary-statistics tableone table1 real-world-data-analysis
Python
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Other
•1•24•0•0•Updated Jan 20, 2025Jan 20, 2025
Isosceles
Public
The Isoforms from Single-Cell; Long-read Expression Suite
R
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GNU General Public License v3.0
•1•24•9•0•Updated Jan 14, 2025Jan 14, 2025
polygraph
Public
Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of regulatory elements.
Jupyter Notebook
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MIT License
•0•28•1•0•Updated Jan 9, 2025Jan 9, 2025
SpatialQPFs
Public
R
•0•3•0•0•Updated Jan 6, 2025Jan 6, 2025
pascient
Public
Jupyter Notebook
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Other
•2•11•0•0•Updated Dec 19, 2024Dec 19, 2024
decima-applications
Public
Jupyter Notebook
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Other
•1•7•0•0•Updated Dec 14, 2024Dec 14, 2024