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    106 repositories

    • beignet

      Public
      A standard library for biological research.
      Python
      •
      MIT License
      •5•19•13•17•Updated Feb 4, 2025Feb 4, 2025

    • gReLU

      Public
      gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.
      Python
      •
      MIT License
      •26•242•22•5•Updated Feb 3, 2025Feb 3, 2025

    • checked

      Public
      batch R CMD check management
      rchecksrevdeps
      R
      •
      Other
      •1•7•11•0•Updated Feb 3, 2025Feb 3, 2025

    • jmpost

      Public
      R
      •4•17•56•2•Updated Feb 3, 2025Feb 3, 2025

    • spex_spatial_transcriptomics

      Public
      Jupyter Notebook
      •
      Other
      •0•0•0•0•Updated Feb 3, 2025Feb 3, 2025

    • phase1b

      Public
      R
      •
      Other
      •2•5•18•3•Updated Feb 2, 2025Feb 2, 2025

    • spex_ms_job_manager

      Public
      Python
      •
      Other
      •0•0•0•0•Updated Jan 30, 2025Jan 30, 2025

    • psborrow2

      Public
      psborrow2: Bayesian Dynamic Borrowing Simulation Study and Analysis
      simulation-studybayesian-dynamic-borrowingpsborrow2r
      R
      •
      Other
      •2•18•6•1•Updated Jan 29, 2025Jan 29, 2025

    • rd2markdown

      Public
      R
      •
      Other
      •0•7•5•0•Updated Jan 27, 2025Jan 27, 2025

    • spex_segmentation

      Public
      Jupyter Notebook
      •
      Other
      •0•0•0•0•Updated Jan 23, 2025Jan 23, 2025

    • spex_backend

      Public
      Python
      •
      Other
      •0•0•0•0•Updated Jan 23, 2025Jan 23, 2025

    • pysummaries

      Public
      Generate beautiful summary tables from pandas dataframes
      pythonpandas-dataframepandastablesclinical-researchsummary-statisticstableonetable1real-world-data-analysis
      Python
      •
      Other
      •1•24•0•0•Updated Jan 20, 2025Jan 20, 2025

    • Isosceles

      Public
      The Isoforms from Single-Cell; Long-read Expression Suite
      R
      •
      GNU General Public License v3.0
      •1•24•8•0•Updated Jan 14, 2025Jan 14, 2025

    • polygraph

      Public
      Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of regulatory elements.
      Jupyter Notebook
      •
      MIT License
      •0•28•1•0•Updated Jan 9, 2025Jan 9, 2025

    • SpatialQPFs

      Public
      R
      •0•3•0•0•Updated Jan 6, 2025Jan 6, 2025

    • scimilarity

      Public
      A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to represent new studies without additional training.
      Python
      •
      Other
      •4•164•16•0•Updated Dec 20, 2024Dec 20, 2024

    • pascient

      Public
      Jupyter Notebook
      •
      Other
      •2•8•0•0•Updated Dec 19, 2024Dec 19, 2024

    • decima-applications

      Public
      Jupyter Notebook
      •
      Other
      •1•7•0•0•Updated Dec 14, 2024Dec 14, 2024

    • spex

      Public
      Jupyter Notebook
      •
      Other
      •0•0•1•0•Updated Dec 13, 2024Dec 13, 2024

    • knotfold

      Public
      Jupyter Notebook
      •
      MIT License
      •0•5•0•0•Updated Dec 10, 2024Dec 10, 2024

    • gneSeqCOO

      Public
      R
      •
      Other
      •0•0•0•0•Updated Dec 2, 2024Dec 2, 2024

    • SASS

      Public
      Python
      •
      Other
      •2•8•0•0•Updated Nov 26, 2024Nov 26, 2024

    • fcr

      Public
      Jupyter Notebook
      •
      Apache License 2.0
      •0•1•0•0•Updated Nov 12, 2024Nov 12, 2024

    • PepMapViz

      Public
      R
      •
      Other
      •0•0•0•0•Updated Nov 7, 2024Nov 7, 2024

    • spex_clustering

      Public
      Python
      •
      Other
      •0•0•0•0•Updated Nov 6, 2024Nov 6, 2024

    • survivalCCW

      Public
      R
      •
      Other
      •1•1•5•0•Updated Nov 5, 2024Nov 5, 2024

    • molcap-arena

      Public
      Associated Repository for "MolCap-Arena: A Comprehensive Captioning Benchmark on Language-Enhanced Molecular Property Prediction"
      Python
      •
      Other
      •0•2•0•0•Updated Nov 4, 2024Nov 4, 2024

    • 2024_cruz_etal

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Oct 29, 2024Oct 29, 2024

    • spex_bundle

      Public
      Jupyter Notebook
      •
      Other
      •0•1•0•0•Updated Oct 27, 2024Oct 27, 2024

    • spex_common

      Public
      Python
      •
      Other
      •0•0•0•0•Updated Oct 27, 2024Oct 27, 2024