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@HenriquesLab AI-driven Optical Biology Laboratory

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    33 repositories

    • Code-of-Conduct

      Public
      The Unlicense
      •0•1•0•0•Updated Jan 11, 2025Jan 11, 2025

    • napari-NanoPyx

      Public
      Python
      •
      Creative Commons Attribution 4.0 International
      •1•7•1•0•Updated Jan 8, 2025Jan 8, 2025

    • NanoPyx

      Public
      Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •9•74•2•4•Updated Jan 8, 2025Jan 8, 2025

    • DL4MicEverywhere

      Public
      Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •10•72•10•2•Updated Dec 19, 2024Dec 19, 2024

    • ZeroCostDL4Mic

      Public
      ZeroCostDL4Mic: A Google Colab based no-cost toolbox to explore Deep-Learning in Microscopy
      Jupyter Notebook
      •
      MIT License
      •134•574•51•6•Updated Dec 19, 2024Dec 19, 2024

    • DL4MicEverywhere-bioimage-io

      Public
      DL4MicEveryqhere Bioimage.IO Resources
      Python
      •
      MIT License
      •0•0•0•1•Updated Dec 19, 2024Dec 19, 2024

    • SReD

      Public
      Structural Repetition Detector (SReD) - Quantitative mapping of molecular complexes
      Jupyter Notebook
      •
      MIT License
      •0•1•0•1•Updated Dec 18, 2024Dec 18, 2024

    • DL4MicEverywhere-album

      Public
      Python
      •0•3•0•0•Updated Dec 16, 2024Dec 16, 2024

    • LiquidEngine

      Public
      Standalone Liquid Engine Python Package
      Python
      •
      Creative Commons Attribution 4.0 International
      •2•5•0•0•Updated Sep 18, 2024Sep 18, 2024

    • python-repo-template

      Public
      Python
      •0•0•0•0•Updated Aug 26, 2024Aug 26, 2024

    • LiquidEngineCookieCutter

      Public
      Python
      •
      Creative Commons Attribution 4.0 International
      •1•1•0•0•Updated Jul 17, 2024Jul 17, 2024

    • PhotoFiTT

      Public
      Computational workflows to assess phototoxicity in live-cell microscopy experiments
      Jupyter Notebook
      •
      MIT License
      •0•10•0•0•Updated Jul 17, 2024Jul 17, 2024

    • easy-gui-jupyter

      Public
      Python
      •
      MIT License
      •1•0•0•1•Updated Jul 8, 2024Jul 8, 2024

    • easy-gui-prompt

      Public
      Python
      •
      MIT License
      •1•1•0•0•Updated Jun 13, 2024Jun 13, 2024

    • NanoJ-SQUIRREL

      Public
      SQUIRREL software package
      Java
      •
      GNU General Public License v3.0
      •3•4•0•0•Updated Mar 22, 2024Mar 22, 2024

    • NanoJ-eSRRF

      Public
      Java
      •
      Apache License 2.0
      •2•19•11•0•Updated Mar 22, 2024Mar 22, 2024

    • NanoJ-Core

      Public
      Core functionality of NanoJ
      Java
      •
      GNU General Public License v3.0
      •3•15•4•0•Updated Mar 22, 2024Mar 22, 2024

    • NanoJ-SRRF

      Public
      Super-resolution radial fluctuations (SRRF)
      Java
      •
      GNU General Public License v3.0
      •2•23•9•0•Updated Mar 22, 2024Mar 22, 2024

    • HenriquesLab.github.io

      Public
      Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
      JavaScript
      •
      MIT License
      •45k•2•0•1•Updated Jan 15, 2024Jan 15, 2024

    • pelican-academic-plugin

      Public
      0•0•0•0•Updated Dec 28, 2023Dec 28, 2023

    • pelican-academic-theme

      Public
      A pelican theme for research lab website, adapted from the Flex theme
      CSS
      •
      MIT License
      •332•0•0•0•Updated Jul 21, 2023Jul 21, 2023

    • ZeroCostDL4Mic-1

      Public
      ZeroCostDL4Mic: A Google Colab based no-cost toolbox to explore Deep-Learning in Microscopy
      Jupyter Notebook
      •
      MIT License
      •134•0•0•0•Updated Jun 16, 2023Jun 16, 2023

    • YeastExM

      Public
      ExM tools database: Here we provide .stl models for 3D printed ExM sample preparation tools.
      1•0•0•0•Updated Apr 1, 2023Apr 1, 2023

    • pyx2pxd

      Public
      Python
      •
      GNU General Public License v2.0
      •0•2•1•0•Updated Mar 15, 2023Mar 15, 2023

    • PublicationsHeatmap

      Public
      Python Jupyter notebook used to generate heatmap of publication records for Roadmap on Deep Learning in Microscopy
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Mar 9, 2023Mar 9, 2023

    • HenriquesLab-bioRxiv-template

      Public
      Please go to https://www.overleaf.com/latex/templates/henriqueslab-biorxiv-template/nyprsybwffws for the original template. This repo will disappear in few days
      TeX
      •
      GNU General Public License v3.0
      •4•0•0•0•Updated Nov 24, 2022Nov 24, 2022

    • NanoJ-Fluidics

      Public
      Manual, source-code and binaries for the NanoJ-Fluidics project
      automationstormsuper-resolutionfluidicslive-cellhigh-contentdna-paintelectronicslegopump
      Java
      •
      MIT License
      •8•50•2•0•Updated Nov 7, 2022Nov 7, 2022

    • DeepBacs

      Public
      Python
      •
      Creative Commons Zero v1.0 Universal
      •3•29•0•0•Updated May 11, 2022May 11, 2022

    • Fieldguide_3DPrinting_Microscopy

      Public
      A repository of 3D models referenced in "The field guide to 3D printing in microscopy"
      0•1•0•0•Updated Feb 24, 2022Feb 24, 2022

    • github-runner-docker

      Public
      Ephemeral github runners in docker
      Shell
      •6•0•0•0•Updated Aug 25, 2021Aug 25, 2021