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    21 repositories

    • bedrock-claude-chat

      Public
      AWS-native chatbot using Bedrock + Claude (+Mistral)
      TypeScript
      •
      MIT No Attribution
      •360•0•0•0•Updated Nov 28, 2024Nov 28, 2024

    • varvis-download

      Public
      A CLI tool to download genomic analysis files from the Varvis API. Supports authentication, file type selection, proxy settings, and destination directory specification.
      apiclinodebioinformaticsauthenticationgenomicsproxy-supportdata-downloadvarvis
      JavaScript
      •
      GNU General Public License v3.0
      •0•1•4•0•Updated Oct 18, 2024Oct 18, 2024

    • chatgpt-mattermost-bot

      Public
      A very simple implementation of a service for a mattermost bot that uses ChatGPT in the backend.
      TypeScript
      •
      MIT License
      •52•0•0•0•Updated Oct 16, 2024Oct 16, 2024

    • hum-exomiser-fork

      Public
      A Tool to Annotate and Prioritize Exome Variants
      Java
      •
      GNU Affero General Public License v3.0
      •55•1•0•0•Updated Sep 20, 2024Sep 20, 2024

    • hum-ngs-vntyper

      Public
      A tool to genotype MUC1 coding VNTR in ADTKD
      Python
      •4•0•0•0•Updated May 31, 2024May 31, 2024

    • LB-tbdb

      Public
      Standard database for the TBProfiler tool
      Python
      •
      GNU Lesser General Public License v3.0
      •18•0•0•0•Updated May 13, 2024May 13, 2024

    • ont-assembly-snake

      Public
      Snakemake workflow for bacterial genome assembly + polishing for Oxford Nanopore (ONT) sequencing using multiple tools.
      Python
      •
      MIT License
      •3•19•0•0•Updated Apr 23, 2024Apr 23, 2024

    • score-assemblies

      Public
      Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s).
      Python
      •
      MIT License
      •1•24•0•0•Updated Apr 5, 2024Apr 5, 2024

    • hum-cubi-tk-fork

      Public
      CUBI Tooling for SODAR, VarFish et al.
      Python
      •
      MIT License
      •6•0•0•1•Updated Mar 20, 2024Mar 20, 2024

    • hum-varfish-annotator-fork

      Public
      Annotate variants for import into VarFish server.
      Java
      •
      MIT License
      •3•0•0•0•Updated Dec 1, 2023Dec 1, 2023

    • hum-varfish-docker-compose-fork

      Public
      Setup VarFish as using Docker Compose
      Makefile
      •
      MIT License
      •3•0•0•0•Updated Dec 1, 2023Dec 1, 2023

    • hum-varfish-server-fork

      Public
      VarFish: comprehensive DNA variant analysis for diagnostics and research
      Python
      •
      MIT License
      •11•0•0•0•Updated Dec 1, 2023Dec 1, 2023

    • hum-varfish-db-downloader-fork

      Public
      Download public/static databases for VarFish
      Python
      •
      MIT License
      •3•0•0•0•Updated Dec 1, 2023Dec 1, 2023

    • hum-varfish-cli-fork

      Public
      VarFish REST API client (CLI + Python package)
      Python
      •
      MIT License
      •3•0•0•0•Updated Dec 1, 2023Dec 1, 2023

    • MultiQC

      Public
      Aggregate results from bioinformatics analyses across many samples into a single report.
      Python
      •
      GNU General Public License v3.0
      •608•1•1•0•Updated Oct 26, 2023Oct 26, 2023

    • hum-gene-ranking-shootout

      Public
      A small benchmark for comparing gene ranking methods
      Python
      •
      MIT License
      •1•0•0•0•Updated May 11, 2023May 11, 2023

    • bioconda-recipes

      Public
      Conda recipes for the bioconda channel.
      Shell
      •
      MIT License
      •3.3k•0•0•0•Updated Apr 5, 2023Apr 5, 2023

    • MultiQC_TestData

      Public
      Test data for MultiQC. See https://github.com/ewels/MultiQC
      HTML
      •
      MIT License
      •146•0•0•0•Updated Mar 15, 2023Mar 15, 2023

    • scramble

      Public
      R
      •
      Other
      •12•0•0•0•Updated Apr 5, 2022Apr 5, 2022

    • LB-ncov2019-artic-nf

      Public
      A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), with a focus on ncov2019
      Nextflow
      •
      GNU Affero General Public License v3.0
      •88•1•0•0•Updated Mar 14, 2022Mar 14, 2022

    • TBProfiler

      Public
      Profiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data
      Python
      •
      GNU General Public License v3.0
      •43•0•0•0•Updated Nov 24, 2021Nov 24, 2021