Skip to content

@OceanGenomics Ocean Genomics, Inc.

Change the repository type filter

All

    Repositories list

    16 repositories

    • mudskipper

      Public
      A tool for projecting genomic alignments to transcriptomic coordinates
      converterbioinformaticsrna-seqscrna-seqtranscriptomics
      Rust
      •
      BSD 3-Clause "New" or "Revised" License
      •8•35•13•1•Updated May 28, 2024May 28, 2024

    • mantis

      Public
      Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search Index
      C++
      •
      BSD 3-Clause "New" or "Revised" License
      •20•1•0•0•Updated Mar 5, 2024Mar 5, 2024

    • arriba

      Public
      Fast and accurate gene fusion detection from RNA-Seq data
      C++
      •
      Other
      •51•0•0•1•Updated Sep 5, 2023Sep 5, 2023

    • salmon

      Public
      🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using lightweight alignments
      C++
      •
      GNU General Public License v3.0
      •164•0•0•2•Updated Sep 4, 2023Sep 4, 2023

    • autoparadvisor

      Public
      Python
      •3•1•0•0•Updated Aug 25, 2023Aug 25, 2023

    • pufferfish

      Public
      An efficient index for the colored, compacted, de Bruijn graph
      C++
      •
      GNU General Public License v3.0
      •20•0•0•0•Updated Sep 18, 2022Sep 18, 2022

    • goofys

      Public
      a high-performance, POSIX-ish Amazon S3 file system written in Go
      Go
      •
      Apache License 2.0
      •526•0•0•0•Updated Mar 9, 2022Mar 9, 2022

    • txomeai

      Public
      R wrapper for the txome.ai RNA-Seq analysis API
      R
      •
      MIT License
      •0•1•0•0•Updated Feb 17, 2022Feb 17, 2022

    • RENT

      Public
      Feature selection method based on repeated elastic net.
      Python
      •
      BSD 2-Clause "Simplified" License
      •6•1•0•0•Updated Jan 31, 2022Jan 31, 2022

    • rnaseqtools

      Public
      toolkit to process gtf files
      C++
      •
      BSD 3-Clause "New" or "Revised" License
      •3•0•0•0•Updated Jun 15, 2021Jun 15, 2021

    • hts

      Public
      biogo high throughput sequencing repository
      Go
      •
      BSD 3-Clause "New" or "Revised" License
      •41•0•0•0•Updated Feb 15, 2021Feb 15, 2021

    • squid

      Public
      SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data
      C++
      •
      BSD 3-Clause "New" or "Revised" License
      •23•0•0•0•Updated Feb 4, 2021Feb 4, 2021

    • scallop

      Public
      Scallop is a reference-based transcriptome assembler for RNA-seq
      C++
      •
      BSD 3-Clause "New" or "Revised" License
      •16•0•0•0•Updated Jun 26, 2020Jun 26, 2020

    • gota

      Public
      Gota: DataFrames and data wrangling in Go (Golang)
      Go
      •
      Other
      •283•1•0•0•Updated Jan 20, 2020Jan 20, 2020

    • sad

      Public
      C++
      •
      BSD 3-Clause "New" or "Revised" License
      •2•0•0•0•Updated Jan 15, 2020Jan 15, 2020

    • diploidsquid

      Public
      Diploid-SQUID detects transcriptomic structural variations in heterogeneous contexts.
      C++
      •
      BSD 3-Clause "New" or "Revised" License
      •2•0•0•0•Updated Oct 18, 2019Oct 18, 2019