Skip to content

@WatsonLab WatsonLab

Change the repository type filter

All

    Repositories list

    11 repositories

    • KOunt

      Public
      Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.
      Python
      •
      GNU General Public License v3.0
      •0•24•0•0•Updated Oct 3, 2024Oct 3, 2024

    • MAGpy

      Public
      Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)
      Python
      •30•62•11•3•Updated Apr 1, 2023Apr 1, 2023

    • single_and_multiple_binning

      Public
      A snakemake workflow for single- and multi- coverage binning
      Python
      •
      MIT License
      •1•1•0•0•Updated May 9, 2022May 9, 2022

    • humann

      Public
      HUMAnN 3.0 is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).
      Python
      •
      Other
      •58•0•0•0•Updated Mar 10, 2021Mar 10, 2021

    • MAGwash

      Public
      Pipeline to clean MAGs
      Python
      •1•5•1•0•Updated May 20, 2020May 20, 2020

    • PULpy

      Public
      Open prediction of Polysaccharide Utilisation Loci (PUL)
      Python
      •9•20•6•0•Updated Apr 22, 2020Apr 22, 2020

    • sm_assemblies

      Public
      Analysis of protein coding exons in single molecule assemblies
      Perl
      •1•7•1•0•Updated Mar 3, 2020Mar 3, 2020

    • GoogleMAGs

      Public
      Workflow for MAG construction
      Python
      •
      MIT License
      •2•1•0•0•Updated Jan 28, 2020Jan 28, 2020

    • chicken_pig_amr

      Public
      Snakemake pipeline for assembly of chicken and pig AMR datasets
      Python
      •1•0•0•0•Updated Oct 5, 2018Oct 5, 2018

    • snakemake_pipelines

      Public
      A repository for public Snakemake pipelines
      Python
      •
      GNU General Public License v3.0
      •0•8•0•0•Updated Oct 16, 2017Oct 16, 2017

    • watsonlab.github.io

      Public
      Watson Lab
      HTML
      •0•0•0•0•Updated Jul 18, 2017Jul 18, 2017