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    71 repositories

    • QutRNA

      Public
      R
      •
      MIT License
      •0•3•0•0•Updated Mar 5, 2025Mar 5, 2025

    • mAFiA

      Public
      Python
      •1•4•5•1•Updated Mar 4, 2025Mar 4, 2025

    • scimodom

      Public
      Sci- ModoM: A quantitative database of transcriptome-wide high-throughput RNA modification sites
      Python
      •
      GNU Affero General Public License v3.0
      •0•0•26•0•Updated Feb 28, 2025Feb 28, 2025

    • gear_lamp

      Public
      Ansible Playbook install for the gEAR repository (DHART) and LAMP stack
      GNU General Public License v3.0
      •1•1•0•0•Updated Feb 28, 2025Feb 28, 2025

    • gEAR

      Public
      The gEAR Portal was created as a data archive and viewer for gene expression data including microarrays, bulk RNA-Seq, single-cell RNA-Seq and more.
      Jupyter Notebook
      •
      GNU Affero General Public License v3.0
      •5•1•6•0•Updated Feb 27, 2025Feb 27, 2025

    • cubi-isa-templates

      Public
      CUBI ISA-Tab templates
      Python
      •
      MIT License
      •5•0•0•0•Updated Feb 25, 2025Feb 25, 2025

    • ecg_data_synthesis

      Public
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Feb 25, 2025Feb 25, 2025

    • ASyH

      Public
      The Anonymous Synthesizer for Health Data
      gaussian-mixture-modelshealth-datavariational-autoencoderanonymizationsynthetic-datasynthetic-dataset-generationml-pipelinectgansynthetic-data-vault
      Python
      •
      MIT License
      •1•4•2•0•Updated Feb 21, 2025Feb 21, 2025

    • euf-specs

      Public
      Specifications of epitranscriptome unified file formats (bedRMod)
      TeX
      •1•0•0•1•Updated Feb 12, 2025Feb 12, 2025

    • LLM_Relations

      Public
      R
      •0•0•0•0•Updated Feb 3, 2025Feb 3, 2025

    • JACUSA2

      Public
      New version of JACUSA -> 2.0
      Java
      •
      GNU General Public License v3.0
      •3•24•29•3•Updated Jan 26, 2025Jan 26, 2025

    • psi-co-mAFiA

      Public
      Python
      •0•0•0•0•Updated Jan 14, 2025Jan 14, 2025

    • crc1550-inf-datamanagement

      Public
      Other
      •0•1•0•0•Updated Jan 7, 2025Jan 7, 2025

    • rp-bp

      Public
      Rp-Bp is a Bayesian approach to predict, at base-pair resolution, ribosome occupancy and translation.
      Python
      •
      MIT License
      •5•7•4•1•Updated Jan 6, 2025Jan 6, 2025

    • pbiotools

      Public
      Bioinformatics utilities
      Python
      •
      MIT License
      •1•0•0•1•Updated Jan 6, 2025Jan 6, 2025

    • ecg_processing

      Public
      Python
      •0•0•0•0•Updated Dec 11, 2024Dec 11, 2024

    • medex

      Public
      Intuitive Graphical User Interface for Medical Data Exploration
      Python
      •
      MIT License
      •3•4•4•2•Updated Oct 28, 2024Oct 28, 2024

    • JACUSA2helper

      Public
      Auxiliary R package for assessment of JACUSA2 results
      R
      •
      GNU General Public License v3.0
      •2•4•11•0•Updated Oct 21, 2024Oct 21, 2024

    • LINDAPlus

      Public
      HTML
      •0•0•0•0•Updated Oct 10, 2024Oct 10, 2024

    • PETGUI

      Public
      We present PETGUI: A user-friendly interface for training and testing a language model using Pattern-Exploiting Training (PET).
      Python
      •
      Apache License 2.0
      •0•1•0•0•Updated Sep 19, 2024Sep 19, 2024

    • xai-in-nlp

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Aug 18, 2024Aug 18, 2024

    • AnonymizeAndSynthesize

      Public
      Code used to produce the results presented in the publication "Anonymize or Synthesize? - Privacy-Preserving Methods for Heart Failure Score Analytics"
      Python
      •
      Other
      •1•3•0•0•Updated Aug 14, 2024Aug 14, 2024

    • sodar-server

      Public
      SODAR: System for Omics Data Access and Retrieval
      Python
      •
      MIT License
      •3•0•0•0•Updated Aug 12, 2024Aug 12, 2024

    • nmdtxdb

      Public
      Shiny application and code for the database for NMD targets
      bioinformaticsdatabasetranscriptomicsnmd
      R
      •
      Other
      •0•2•2•0•Updated Aug 12, 2024Aug 12, 2024

    • nmd-wf

      Public
      R
      •
      MIT License
      •1•1•0•0•Updated Jul 4, 2024Jul 4, 2024

    • sodar-docker-compose

      Public
      Setup SODAR using Docker Compose
      Shell
      •
      MIT License
      •3•0•0•0•Updated Jul 3, 2024Jul 3, 2024

    • knowledge-graph-extraction-from-llms

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Mar 11, 2024Mar 11, 2024

    • prRONTo

      Public
      R
      •0•0•1•0•Updated Feb 6, 2024Feb 6, 2024

    • circtools

      Public
      circtools: a modular, python-based framework for circRNA-related tools that unifies several functionalities in a single, command line driven software.
      bioinformaticstoolboxbioconductordcccircular-rnaprimer-designcomputational-rna-biologyrbpfuchs
      Python
      •
      GNU General Public License v3.0
      •21•27•12•1•Updated Dec 19, 2023Dec 19, 2023

    • pulseRTc

      Public
      Our work on cardiac myocyte half lifes with a focus on transcripts / proteins
      Python
      •
      GNU General Public License v3.0
      •0•0•1•0•Updated Sep 13, 2023Sep 13, 2023