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AmpliconSuite
PublicWraps the AmpliconSuite-pipeline workflow to identify one or more connected genomic regions which have copy number amplifications.common_module_code
Publicgenepattern-server
PublicThe GenePattern Server web applicationTangram
PublicspatialGE.STclust
PublicspatialGE.STenrich
PublicSpatial enrichment of gene sets based on https://github.com/FridleyLab/spatialGEAmpliconSuiteAggregator
PublicspatialGE.Preprocessing
PublicRepo for the GenePattern Preprocessing module based on https://github.com/FridleyLab/spatialGESeurat.Clustering
Publicgenepattern-notebook
PublicPlatform for integrating genomic analysis with Jupyter Notebooks.tfsites.AffinityScan
Publictfsites.common_docker
Publictfsites.LoadGenome
PublicHarmony
PublicFcsToCsv
PublicRandomForest.GPU
PublicRandom Forest GPU, GenePattern - Mesirov Lab, UCSDtximport.DESeq2
PublicRandomForest
PublicRandom Forest, GenePattern - Mesirov Lab, UCSDtfsites.AnalyzeEQTLs
Publictfsites.CompareEnhancers
Publicgenepattern-python
PublicGenePattern Python Library