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    22 repositories

    • sequoia-pub

      Public
      SEQUOIA: Digital profiling of cancer transcriptomes with grouped vision attention
      Python
      •
      MIT License
      •0•6•1•0•Updated Oct 4, 2024Oct 4, 2024

    • EpiMix

      Public
      R
      •0•1•1•0•Updated May 1, 2024May 1, 2024

    • .github

      Public
      0•0•0•0•Updated Jan 25, 2024Jan 25, 2024

    • Variational-Auto-Encoder

      Public
      Jupyter Notebook
      •
      MIT License
      •0•3•0•0•Updated Dec 15, 2023Dec 15, 2023

    • GBM360

      Public
      Spatial cellular architecture predicts prognosis in glioblastoma - Nature Communications
      Python
      •
      GNU General Public License v3.0
      •2•18•2•0•Updated Dec 11, 2023Dec 11, 2023

    • RNA-GAN

      Public
      Synthetic whole-slide imaging tile generation with gene expression profiles infused deep generative models - Cell Reports Methods
      Python
      •
      MIT License
      •2•14•0•0•Updated Aug 31, 2023Aug 31, 2023

    • MultiModalBrainSurvival

      Public
      Python
      •4•17•1•0•Updated Jul 20, 2023Jul 20, 2023

    • EpiMix.data

      Public
      Supporting experiment data package for the EpiMix R package.
      R
      •0•0•0•0•Updated Jun 23, 2023Jun 23, 2023

    • AMARETTO

      Public
      Regulatory network inference and driver gene evaluation using integrative multi-omics analysis and penalized regression
      R
      •
      Apache License 2.0
      •12•16•3•0•Updated Apr 6, 2023Apr 6, 2023

    • BetaVAEImputation

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •3•12•1•0•Updated May 24, 2022May 24, 2022

    • Roche-Project

      Public
      Python
      •1•0•0•0•Updated Apr 13, 2022Apr 13, 2022

    • lncRNA_pancancer

      Public
      lncRNA gene expression profiles for tumor samples from TCGA
      1•0•0•0•Updated Apr 6, 2022Apr 6, 2022

    • metalearning_survival

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •9•15•2•0•Updated Feb 11, 2021Feb 11, 2021

    • RNASeq_pipeline

      Public
      Shell
      •
      MIT License
      •10•5•0•0•Updated Feb 5, 2020Feb 5, 2020

    • LungNet

      Public
      Predicting overall survival for lung cancer patients using deep learning on lung CTs
      Python
      •2•1•0•0•Updated Sep 20, 2019Sep 20, 2019

    • methylation-based-diagnostic-signature-to-distinguish-renal-cell-carcinoma-from-oncocytoma

      Public
      R code for manuscript: 'Development of a DNA methylation-based diagnostic signature to distinguish renal cell carcinoma from benign oncocytoma'
      R
      •1•0•0•0•Updated Aug 16, 2019Aug 16, 2019

    • DAPL

      Public
      Autoencoder network for imputing missing values
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •8•26•3•0•Updated May 13, 2019May 13, 2019

    • radiomics_pipeline

      Public
      MATLAB
      •2•7•0•0•Updated May 7, 2019May 7, 2019

    • MultimodalPrognosis

      Public
      Deep Learning with Multimodal Representation for Pancancer Prognosis Prediction
      Python
      •25•81•4•0•Updated Mar 20, 2019Mar 20, 2019

    • MethylMix

      Public
      Identification of differentially methylated genes in biomedical data
      R
      •11•13•10•0•Updated Feb 7, 2019Feb 7, 2019

    • miccai-cpm-ensemble

      Public
      MICCAI 2018 Computational Precision Medicine Challenge: Combined Pathology and Radiology Classification
      Jupyter Notebook
      •5•2•0•0•Updated Oct 11, 2018Oct 11, 2018

    • ProteoMix

      Public
      R
      •0•0•0•0•Updated May 19, 2018May 19, 2018