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@harvard-nrg Neuroinformatics Research Group

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    36 repositories

    • dwiqc

      Public
      DWI QC Pipeline
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•2•0•0•Updated Jan 29, 2025Jan 29, 2025

    • scanbuddy

      Public
      Real time plotting of bold data
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•1•3•2•Updated Jan 28, 2025Jan 28, 2025

    • starfish-report

      Public
      Starfish Storage Report
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Jan 27, 2025Jan 27, 2025

    • mrscrub

      Public
      Remove identifying information from DICOM files
      Python
      •
      Other
      •3•3•0•0•Updated Jan 24, 2025Jan 24, 2025

    • madrctagger

      Public
      MADRC scan tagger
      Python
      •0•0•0•0•Updated Jan 3, 2025Jan 3, 2025

    • dicomwatch

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Dec 12, 2024Dec 12, 2024

    • anatqc

      Public
      T1w QC pipeline
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•2•0•1•Updated Dec 3, 2024Dec 3, 2024

    • yaxil

      Public
      YAXIL - Yet another XNAT interface library
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •5•8•4•3•Updated Aug 14, 2024Aug 14, 2024

    • executors

      Public
      Job scheduler abstractions
      Python
      •1•0•0•0•Updated Aug 6, 2024Aug 6, 2024

    • xnat-docker-compose

      Public
      Build an XNAT server configuration with Docker Compose
      Dockerfile
      •
      Other
      •87•0•0•0•Updated Apr 17, 2024Apr 17, 2024

    • vnav

      Public
      A python script for parsing motion info in vNav DICOM series
      Python
      •
      MIT License
      •10•1•0•0•Updated Apr 12, 2024Apr 12, 2024

    • xnattagger

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•1•Updated Apr 5, 2024Apr 5, 2024

    • mri_stability_diamondcollector

      Public
      Python
      •1•0•0•0•Updated Apr 1, 2024Apr 1, 2024

    • boldqc

      Public
      BOLD QC pipeline
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•1•0•Updated Mar 28, 2024Mar 28, 2024

    • mano

      Public
      Mano - Beiwe research platform API
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •3•0•0•0•Updated Mar 20, 2024Mar 20, 2024

    • extqc-report

      Public
      ExtendedBOLDQC Report
      HTML
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Feb 21, 2024Feb 21, 2024

    • ndagen

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Feb 6, 2024Feb 6, 2024

    • selfie

      Public
      Dump provenance information for executed command
      Python
      •0•0•0•0•Updated Nov 21, 2023Nov 21, 2023

    • realta

      Public
      Data management tools for the STAR study
      Python
      •0•0•0•0•Updated Sep 12, 2023Sep 12, 2023

    • PreQual

      Public
      An automated pipeline for integrated preprocessing and quality assurance of diffusion weighted MRI images
      Python
      •
      Other
      •8•0•0•0•Updated May 8, 2023May 8, 2023

    • python-workshop

      Public
      Python for Neuroimaging Workshop
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•0•0•Updated Apr 3, 2023Apr 3, 2023

    • mrverify

      Public
      MRI scan parameter verification
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Jan 18, 2023Jan 18, 2023

    • lochness

      Public
      Download your data to a data lake.
      Python
      •
      Other
      •2•5•3•7•Updated Dec 8, 2022Dec 8, 2022

    • morphometry

      Public
      FreeSurfer E2E
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Oct 6, 2022Oct 6, 2022

    • dpsleep

      Public
      Deep Phenotyping of Sleep
      MATLAB
      •
      Other
      •1•5•0•0•Updated Apr 28, 2022Apr 28, 2022

    • pygeneactiv

      Public
      A python library for reading GENEActiv data
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•3•0•1•Updated Apr 20, 2021Apr 20, 2021

    • cryptease

      Public
      Cryptease - ease yourself into encryption
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•0•1•Updated Apr 20, 2021Apr 20, 2021

    • logbook

      Public
      Logbook pipeline
      Python
      •
      Other
      •1•0•0•1•Updated Mar 29, 2021Mar 29, 2021

    • dpsleep-qcact

      Public
      DPSleep Quality Control
      MATLAB
      •
      Other
      •0•0•0•0•Updated Feb 4, 2021Feb 4, 2021

    • dppy

      Public
      DPdash importer
      Python
      •
      Other
      •1•0•1•0•Updated Sep 12, 2019Sep 12, 2019