everything.yml

#######################################
# Ideally this would be done in seperate workflows but placing them all
# in one is currently necessary to enforce job dependencies
#######################################

#######################################
# Note the use of multiple checkout actions in most jobs.  This has been
# implemented to allow the use of CI scripts at a different ref or sha than
# the source code they're evaluating.  For push events (when a pull_request is
# merged) there is no difference.  However, for pull_request events this allows
# us test code at the head of a pull_request using the CI scripts from the
# prospectively merged pull_request, which will include any CI updates that
# may have made it to the target branch after the pull_request was started.
#######################################

#######################################
# Note regarding restore/save of cache for use by ccache:
#
# We only save cache on main branch runs. PR workflows only consume the
# cache to avoid exceeding the 10 GB limit, which can cause cache thrashing.
# Also, we only save the cache if there was *not* an exact match when cache
# was restored. This avoids attempting to write to an existing cache key,
# which results in failure to save the cache. While failure to save doesn't
# cause job failures, it seems a waste and is easily avoidable.
#######################################

name: GitHub Actions

on:
  push:
    branches:
      - master
      - release*
  pull_request:
    branches:
      - master
      - release*

concurrency:
  group: ${{ github.head_ref || github.run_id }}
  cancel-in-progress: true

jobs:

#######################################
# Git checks
#######################################

  git_checks:
    runs-on: ubuntu-latest
    outputs:
      num_code_changes: ${{ steps.get_code_changes.outputs.num_code_changes }}
    steps:
      - uses: actions/checkout@v4
        with:
          fetch-depth: 0
      - name: Check for appropriately named topic branch
        run: |
          scripts/ci/gh-actions/check-branch-name.sh
      - name: Check for code changes
        id: get_code_changes
        run: |
          scripts/ci/gh-actions/get-changed-files.sh
          echo "::group::Test script output files"
          ls -la *-changed-files.txt
          NUM_CHANGES=$(wc -l < filtered-changed-files.txt)
          echo "Number of files changed (filtered): ${NUM_CHANGES}"
          echo "::set-output name=num_code_changes::${NUM_CHANGES}"

#######################################
# Formatting jobs
#######################################

  format:
    needs: git_checks
    if: needs.git_checks.outputs.num_code_changes > 0

    runs-on: ubuntu-latest
    container:
      image: ghcr.io/ornladios/adios2:ci-formatting

    steps:
      - uses: actions/checkout@v4
        with:
          path: gha
      - uses: actions/checkout@v4
        with:
          ref: ${{ github.event.pull_request.head.sha }}
          path: source
      - name: CXX
        working-directory: source
        run: ../gha/scripts/ci/scripts/run-clang-format.sh
      - name: Python
        working-directory: source
        run: ../gha/scripts/ci/scripts/run-flake8.sh
      - name: Shell
        working-directory: source
        run: ../gha/scripts/ci/scripts/run-shellcheck.sh


#######################################
# Build and test jobs
#######################################

  linux_ubuntu:
    needs: [format, git_checks]
    if: needs.git_checks.outputs.num_code_changes > 0

    runs-on: ubuntu-20.04
    container:
      image: ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-${{ matrix.compiler }}
      options: --shm-size=1g
      env:
        GH_YML_JOBNAME: ${{ matrix.os }}-${{ matrix.compiler }}${{ matrix.shared == 'static' && '-static' || ''}}-${{ matrix.parallel }}
        GH_YML_BASE_OS: Linux
        GH_YML_MATRIX_OS: ${{ matrix.os }}
        GH_YML_MATRIX_COMPILER: ${{ matrix.compiler }}
        GH_YML_MATRIX_PARALLEL: ${{ matrix.parallel }}
        CCACHE_BASEDIR: "${GITHUB_WORKSPACE}"
        CCACHE_DIR: "${GITHUB_WORKSPACE}/.ccache"
        CCACHE_COMPRESS: true
        CCACHE_COMPRESSLEVEL: 6

    strategy:
      fail-fast: false
      matrix:
        os: [ubuntu20.04]
        compiler: [gcc8, gcc9, gcc10, gcc11, clang6, clang10]
        shared: [shared]
        parallel: [mpich]
        include:
          - os: ubuntu20.04
            compiler: gcc8
            parallel: ompi
          - os: ubuntu20.04
            compiler: gcc8
            parallel: serial
          - os: ubuntu20.04
            compiler: clang6
            parallel: ompi
          - os: ubuntu20.04
            compiler: clang6
            parallel: serial
          - os: ubuntu20.04
            compiler: gcc8
            shared: static
            parallel: ompi
            constrains: build_only
          - os: ubuntu20.04
            compiler: clang6
            shared: static
            parallel: ompi
            constrains: build_only
          - os: ubuntu20.04
            compiler: gcc8
            shared: static
            parallel: serial
    steps:
      - uses: actions/checkout@v4
        with:
          path: gha
      - uses: actions/checkout@v4
        with:
          ref: ${{ github.event.pull_request.head.sha }}
          path: source
      - name: Restore cache
        uses: actions/cache/restore@v3
        id: restore-cache
        with:
          path: .ccache
          key: ccache-${{ matrix.os }}-${{ matrix.compiler }}-${{ matrix.parallel }}-${{ github.sha }}
          restore-keys: |
            ccache-${{ matrix.os }}-${{ matrix.compiler }}-${{ matrix.parallel }}
      - name: Configure cache
        run: ccache -z
      - name: Setup
        run: gha/scripts/ci/gh-actions/linux-setup.sh
      - name: Update
        run: gha/scripts/ci/gh-actions/run.sh update
      - name: Configure
        run: gha/scripts/ci/gh-actions/run.sh configure
      - name: Build
        run: gha/scripts/ci/gh-actions/run.sh build
      - name: Print ccache statistics
        run: ccache -s
      - name: Save cache
        uses: actions/cache/save@v3
        if: ${{ github.ref_name == 'master' && steps.restore-cache.outputs.cache-hit != 'true' }}
        id: save-cache
        with:
          path: .ccache
          key: ccache-${{ matrix.os }}-${{ matrix.compiler }}-${{ matrix.parallel }}-${{ github.sha }}
      - name: Test
        if: ${{ matrix.constrains != 'build_only' }}
        run: gha/scripts/ci/gh-actions/run.sh test

  linux_el8:
    needs: [format, git_checks]
    if: needs.git_checks.outputs.num_code_changes > 0

    runs-on: ubuntu-latest
    container:
      image: ghcr.io/ornladios/adios2:ci-el8-${{ matrix.compiler }}
      options: --shm-size=1g
      env:
        GH_YML_JOBNAME: ${{ matrix.os }}-${{ matrix.compiler }}-${{ matrix.parallel }}
        GH_YML_BASE_OS: Linux
        GH_YML_MATRIX_OS: ${{ matrix.os }}
        GH_YML_MATRIX_COMPILER: ${{ matrix.compiler }}
        GH_YML_MATRIX_PARALLEL: ${{ matrix.parallel }}
        CCACHE_BASEDIR: "${GITHUB_WORKSPACE}"
        CCACHE_DIR: "${GITHUB_WORKSPACE}/.ccache"
        CCACHE_COMPRESS: true
        CCACHE_COMPRESSLEVEL: 6

    strategy:
      fail-fast: false
      matrix:
        os: [el8]
        compiler: [icc, oneapi]
        parallel: [mpich]

    steps:
      - uses: actions/checkout@v4
        with:
          path: gha
      - uses: actions/checkout@v4
        with:
          ref: ${{ github.event.pull_request.head.sha }}
          path: source
      - name: Restore cache
        uses: actions/cache/restore@v3
        id: restore-cache
        with:
          path: .ccache
          key: ccache-${{ matrix.os }}-${{ matrix.compiler }}-${{ matrix.parallel }}-${{ github.sha }}
          restore-keys: |
            ccache-${{ matrix.os }}-${{ matrix.compiler }}-${{ matrix.parallel }}
      - name: Configure cache
        run: ccache -z
      - name: Setup
        run: gha/scripts/ci/gh-actions/linux-setup.sh
      - name: Update
        run: gha/scripts/ci/gh-actions/run.sh update
      - name: Configure
        run: gha/scripts/ci/gh-actions/run.sh configure
      - name: Build
        run: gha/scripts/ci/gh-actions/run.sh build
      - name: Print ccache statistics
        run: ccache -s
      - name: Save cache
        uses: actions/cache/save@v3
        if: ${{ github.ref_name == 'master' && steps.restore-cache.outputs.cache-hit != 'true' }}
        id: save-cache
        with:
          path: .ccache
          key: ccache-${{ matrix.os }}-${{ matrix.compiler }}-${{ matrix.parallel }}-${{ github.sha }}
      - name: Test
        run: gha/scripts/ci/gh-actions/run.sh test

  macos:
    needs: [format, git_checks]
    if: needs.git_checks.outputs.num_code_changes > 0

    runs-on: ${{ matrix.image }}
    env:
      GH_YML_JOBNAME: ${{ matrix.os }}-${{ matrix.compiler }}-${{ matrix.parallel }}
      GH_YML_BASE_OS: macOS
      GH_YML_MATRIX_OS: ${{ matrix.os }}
      GH_YML_MATRIX_COMPILER: ${{ matrix.compiler }}
      GH_YML_MATRIX_PARALLEL: ${{ matrix.parallel }}
      CCACHE_BASEDIR: "${GITHUB_WORKSPACE}"
      CCACHE_DIR: "${GITHUB_WORKSPACE}/.ccache"
      CCACHE_COMPRESS: true
      CCACHE_COMPRESSLEVEL: 6

    strategy:
      fail-fast: false
      matrix:
        os: [macos11, macos12]
        parallel: [serial]
        include:
          - os: macos11
            image: macos-11
            compiler: xcode13_0
          - os: macos12
            image: macos-12
            compiler: xcode13_4_1

    steps:
      - uses: actions/checkout@v4
        with:
          path: gha
      - uses: actions/checkout@v4
        with:
          ref: ${{ github.event.pull_request.head.sha }}
          path: source
      - name: Setup
        run: gha/scripts/ci/gh-actions/macos-setup.sh
      - name: Restore cache
        uses: actions/cache/restore@v3
        id: restore-cache
        with:
          path: .ccache
          key: ccache-${{ matrix.os }}-${{ matrix.compiler }}-${{ matrix.parallel }}-${{ github.sha }}
          restore-keys: |
            ccache-${{ matrix.os }}-${{ matrix.compiler }}-${{ matrix.parallel }}
      - name: Configure cache
        run: ccache -z
      - name: Update
        run: gha/scripts/ci/gh-actions/run.sh update
      - name: Configure
        run: gha/scripts/ci/gh-actions/run.sh configure
      - name: Build
        run: gha/scripts/ci/gh-actions/run.sh build
      - name: Print ccache statistics
        run: ccache -s
      - name: Save cache
        uses: actions/cache/save@v3
        if: ${{ github.ref_name == 'master' && steps.restore-cache.outputs.cache-hit != 'true' }}
        id: save-cache
        with:
          path: .ccache
          key: ccache-${{ matrix.os }}-${{ matrix.compiler }}-${{ matrix.parallel }}-${{ github.sha }}
      - name: Test
        run: gha/scripts/ci/gh-actions/run.sh test

  windows:
    needs: [format, git_checks]
    if: needs.git_checks.outputs.num_code_changes > 0

    runs-on: ${{ matrix.image }}
    env:
      GH_YML_JOBNAME: ${{ matrix.os }}-${{ matrix.compiler }}-${{ matrix.parallel }}
      GH_YML_BASE_OS: Windows
      GH_YML_MATRIX_OS: ${{ matrix.os }}
      GH_YML_MATRIX_COMPILER: ${{ matrix.compiler }}
      GH_YML_MATRIX_PARALLEL: ${{ matrix.parallel }}

    strategy:
      fail-fast: false
      matrix:
        os: [win2019, win2022]
        parallel: [serial, ompi]
        include:
          - os: win2019
            image: windows-2019
            compiler: vs2019
          - os: win2022
            image: windows-2022
            compiler: vs2022

    defaults:
      run:
        shell: bash

    steps:
      - uses: actions/checkout@v4
        with:
          path: gha
      - uses: actions/checkout@v4
        with:
          ref: ${{ github.event.pull_request.head.sha }}
          path: source
      - name: Setup
        shell: pwsh
        run: gha/scripts/ci/gh-actions/windows-setup.ps1
      - name: Update
        run: gha/scripts/ci/gh-actions/run.sh update
      - name: Configure
        run: gha/scripts/ci/gh-actions/run.sh configure
      - name: Build
        run: gha/scripts/ci/gh-actions/run.sh build
      - name: Test
        run: gha/scripts/ci/gh-actions/run.sh test

#######################################
# Docker container jobs
#######################################

  docker:
    needs: [format, git_checks]
    if: needs.git_checks.outputs.num_code_changes > 0

    runs-on: ubuntu-latest
    strategy:
      fail-fast: false
      matrix:
        baseos: [ubuntu-bionic]

    steps:
      - uses: actions/checkout@v4
        with:
          ref: ${{ github.event.pull_request.head.sha }}
          path: ci-source
      - name: Re-configure docker daemon
        run: |
            sudo systemctl stop docker
            echo $'{\n    "experimental": true\n}' | \
                sudo tee /etc/docker/daemon.json
            sudo systemctl start docker
      - name: Build image
        run: |
            docker build \
                --rm --squash \
                -t ornladios/adios2:ci-tmp \
                --build-arg baseos=${{ matrix.baseos }} \
                --build-arg ci_source_dir=ci-source \
                -f ci-source/scripts/ci/images/spack/Dockerfile \
                .
      - name: Save image as a tar file
        run: |
            docker save -o ci-docker.tar ornladios/adios2:ci-tmp
            ls -lah ci-docker.tar
      - name: Upload
        uses: actions/upload-artifact@v2
        with:
          retention-days: 1
          name: ci-docker ${{ matrix.baseos }} ${{ github.sha }}
          path: ci-docker.tar
      - name: Push image to Docker Hub
        if: github.event_name == 'push'
        env:
          DOCKERHUB_USERNAME: ${{ secrets.DOCKERHUB_USERNAME }}
          DOCKERHUB_PASSWORD: ${{ secrets.DOCKERHUB_PASSWORD }}
        run: |
            target_tag="${GITHUB_REF##refs/heads/}-${{ matrix.baseos }}"
            docker tag \
                ornladios/adios2:ci-tmp \
                ornladios/adios2:${target_tag}
            docker login \
                --username="${DOCKERHUB_USERNAME}" \
                --password="${DOCKERHUB_PASSWORD}"
            docker push \
                ornladios/adios2:${target_tag}

#######################################
# Contract testing jobs
#######################################

  # These contract testing jobs use the container built in the previous
  # docker job and runs it in a way similar to how a typical GitHub
  # Actions container job does.  Using the "messy" default shell for
  # run steps lets the steps be written as though they too were using a
  # standard container job.
  contract:
    needs: [format, git_checks, docker]
    if: needs.git_checks.outputs.num_code_changes > 0

    runs-on: ubuntu-latest
    strategy:
      fail-fast: false
      matrix:
        code: [examples, lammps, tau]
        include:
          - code: examples
          - code: lammps
            repo: pnorbert/lammps
            ref: fix-deprecated-adios-init
          - code: tau
    defaults:
      run:
        shell: bash -c "docker exec adios2-ci bash --login -e $(echo {0} | sed 's|/home/runner/work|/__w|g')"

    steps:
      - uses: actions/checkout@v4
        if: ${{ matrix.repo != '' }}
        with:
          repository: ${{ matrix.repo }}
          ref: ${{ matrix.ref }}
          path: source
      - name: Download CI docker image
        uses: actions/download-artifact@v2
        with:
          name: ci-docker ubuntu-bionic ${{ github.sha }}
      - name: Initialize containers
        shell: bash -e {0}
        run: |
            sudo chown 1000:1000 .
            docker load -i ci-docker.tar
            docker create \
                --name adios2-ci --workdir /__w/ADIOS2/ADIOS2 \
                -v "/home/runner/work":"/__w" \
                --entrypoint "tail" ornladios/adios2:ci-tmp \
                "-f" "/dev/null"
            docker start adios2-ci
      - name: Dependencies
        run: /opt/adios2/source/testing/contract/${{ matrix.code }}/depends.sh
      - name: Configure
        run: /opt/adios2/source/testing/contract/${{ matrix.code }}/config.sh
      - name: Build
        run: /opt/adios2/source/testing/contract/${{ matrix.code }}/build.sh
      - name: Install
        run: /opt/adios2/source/testing/contract/${{ matrix.code }}/install.sh
      - name: Test
        run: /opt/adios2/source/testing/contract/${{ matrix.code }}/test.sh

#######################################
# Code analysis builds
#######################################

  analyze:
    needs: [format, git_checks]
    name: CodeQL
    runs-on: ubuntu-latest
    container:
      image: 'ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-gcc8'
      env:
        GH_YML_JOBNAME: ubuntu20.04-gcc8-serial-codeql
        GH_YML_BASE_OS: Linux
        GH_YML_MATRIX_OS: ubuntu20.04
        GH_YML_MATRIX_COMPILER: gcc8
        GH_YML_MATRIX_PARALLEL: serial
    permissions:
      actions: read
      contents: read
      security-events: write

    strategy:
      fail-fast: false
      matrix:
        language: [ 'cpp' ]

    steps:
    - uses: actions/checkout@v4
      with:
        path: gha
    - uses: actions/checkout@v4
      with:
        ref: ${{ github.event.pull_request.head.sha }}
        path: source
    - name: Initialize CodeQL
      uses: github/codeql-action/init@v2
      with:
        languages: ${{ matrix.language }}
        config: |
          paths:
            - source
          paths-ignore:
            - source/thirdparty
    - name: Setup
      run: gha/scripts/ci/gh-actions/linux-setup.sh
    - name: Update
      run: gha/scripts/ci/gh-actions/run.sh update
    - name: Configure
      run: gha/scripts/ci/gh-actions/run.sh configure
    - name: Build
      run: gha/scripts/ci/gh-actions/run.sh build
    - name: Perform CodeQL Analysis
      uses: github/codeql-action/analyze@v2
      with:
        category: "/language:${{matrix.language}}"

#######################################
# Workaround for skipping matrix jobs
#######################################

  build_and_test:
    needs: [linux_el8, linux_ubuntu, macos, docker, contract]
    runs-on: ubuntu-latest
    steps:
      - run: echo "All required jobs complete"