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Reporting delays #7

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ywteh opened this issue Jul 10, 2020 · 1 comment
Open

Reporting delays #7

ywteh opened this issue Jul 10, 2020 · 1 comment

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@ywteh
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ywteh commented Jul 10, 2020

Use simple idea in https://epiforecasts.io/covid/posts/national/united-kingdom/

Can we deal with weekend/holiday effects?

@MJHutchinson
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The current delay profile probably is not as we would like it. Currently, we use a Gamma(5, 1) distribution. Unfortunately, this gives a mean just under the mean serial interval, and a median delay of about 3 days and does not account for random test delay.

The suggestion is to switch to something with a tighter variance and account for individual test delay as well as the serial interval. Suggestions include:

  • Tightening the variance on the Gamma distribution for the serial interval.
  • Switching the Gamma for lognormal for the serial interval.
  • Adding 1 + Poisson(1 or 2) as a random test delay after noticing symptoms.

@ywteh ywteh added this to the phase1 milestone Oct 23, 2020
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