Merge pull request #8 from pachadotdev/roxygen

Roxygen

Author: pachadotdev

R/register.R

@@ -77,17 +77,16 @@ cpp_register <- function(path = ".", quiet = !is_interactive(), extension = c(".
     cli::cli_alert_success("generated file {.file {basename(r_path)}}")
   }
 
-
   call_entries <- get_call_entries(path, funs$name, package)
 
   cpp_function_registration <- glue::glue_data(funs, '    {{
     "_cpp11_{name}", (DL_FUNC) &_{package}_{name}, {n_args}}}, ',
     n_args = viapply(funs$args, nrow)
   )
 
-  cpp_function_registration <- glue::glue_collapse(cpp_function_registration, sep  = "\n")
+  cpp_function_registration <- glue::glue_collapse(cpp_function_registration, sep = "\n")
 
-  extra_includes <-  character()
+  extra_includes <- character()
   if (pkg_links_to_rcpp(path)) {
     extra_includes <- c(extra_includes, "#include <cpp11/R.hpp>", "#include <Rcpp.h>", "using namespace Rcpp;")
   }
@@ -215,35 +214,75 @@ generate_init_functions <- function(funs) {
 }
 
 generate_r_functions <- function(funs, package = "cpp11", use_package = FALSE) {
-  funs <- funs[c("name", "return_type", "args")]
+  funs <- funs[c("name", "return_type", "args", "file", "line", "decoration")]
 
   if (use_package) {
     package_call <- glue::glue(', PACKAGE = "{package}"')
     package_names <- glue::glue_data(funs, '"_{package}_{name}"')
   } else {
-    package_names <- glue::glue_data(funs, '`_{package}_{name}`')
+    package_names <- glue::glue_data(funs, "`_{package}_{name}`")
     package_call <- ""
   }
 
-  funs$package <- package
   funs$package_call <- package_call
   funs$list_params <- vcapply(funs$args, glue_collapse_data, "{name}")
   funs$params <- vcapply(funs$list_params, function(x) if (nzchar(x)) paste0(", ", x) else x)
   is_void <- funs$return_type == "void"
   funs$calls <- ifelse(is_void,
-    glue::glue_data(funs, 'invisible(.Call({package_names}{params}{package_call}))'),
-    glue::glue_data(funs, '.Call({package_names}{params}{package_call})')
+    glue::glue_data(funs, "invisible(.Call({package_names}{params}{package_call}))"),
+    glue::glue_data(funs, ".Call({package_names}{params}{package_call})")
   )
 
-  out <- glue::glue_data(funs, '
-    {name} <- function({list_params}) {{
-      {calls}
-    }}
-    ')
+  # Parse and associate Roxygen comments
+  funs$roxygen_comment <- mapply(function(file, line) {
+    if (file.exists(file)) {
+      comments <- extract_roxygen_comments(file)
+      matched_comment <- ""
+      for (comment in comments) {
+        # Check if the comment directly precedes the function without gaps
+        if (line == comment$line + 1) {
+          matched_comment <- comment$text
+          break
+        }
+      }
+      matched_comment
+    } else {
+      ""
+    }
+  }, funs$file, funs$line, SIMPLIFY = TRUE)
+
+  # Generate R functions with or without Roxygen comments
+  out <- mapply(function(name, list_params, calls, roxygen_comment) {
+    if (nzchar(roxygen_comment)) {
+      glue::glue("{roxygen_comment}\n{name} <- function({list_params}) {{\n\t{calls}\n}}")
+    } else {
+      glue::glue("{name} <- function({list_params}) {{\n  {calls}\n}}")
+    }
+  }, funs$name, funs$list_params, funs$calls, funs$roxygen_comment, SIMPLIFY = TRUE)
+
+  out <- glue::trim(out)
   out <- glue::glue_collapse(out, sep = "\n\n")
   unclass(out)
 }
 
+extract_roxygen_comments <- function(file) {
+  lines <- readLines(file)
+  roxygen_start <- grep("^/\\* roxygen start", lines)
+  roxygen_end <- grep("roxygen end \\*/$", lines)
+
+  if (length(roxygen_start) == 0 || length(roxygen_end) == 0) {
+    return(list())
+  }
+
+  roxygen_comments <- mapply(function(start, end) {
+    roxygen_lines <- lines[(start + 1):(end - 1)]
+    roxygen_lines <- sub("^", "#' ", roxygen_lines)
+    list(line = end, text = paste(roxygen_lines, collapse = "\n"))
+  }, roxygen_start, roxygen_end, SIMPLIFY = FALSE)
+
+  roxygen_comments
+}
+
 wrap_call <- function(name, return_type, args) {
   call <- glue::glue('{name}({list_params})', list_params = glue_collapse_data(args, "cpp11::as_cpp<cpp11::decay_t<{type}>>({name})"))
   if (return_type == "void") {

cpp11test/NAMESPACE

@@ -1,5 +1,10 @@
 # Generated by roxygen2: do not edit by hand
 
+export(roxcpp2_)
+export(roxcpp3_)
+export(roxcpp4_)
+export(roxcpp5_)
+export(roxcpp7_)
 export(run_tests)
 exportPattern("_$")
 importFrom(Rcpp,sourceCpp)

cpp11test/R/cpp11.R

@@ -156,6 +156,63 @@ rcpp_release_ <- function(n) {
   invisible(.Call(`_cpp11test_rcpp_release_`, n))
 }
 
+notroxcpp1_ <- function(x) {
+  .Call(`_cpp11test_notroxcpp1_`, x)
+}
+
+#' @title Roxygenise C++ function II
+#' @param x numeric value
+#' @description Dummy function to test roxygen2. It adds 2.0 to a double.
+#' @export
+#' @examples roxcpp2_(1.0)
+roxcpp2_ <- function(x) {
+	.Call(`_cpp11test_roxcpp2_`, x)
+}
+
+#' @title Roxygenise C++ function III
+#' @param x numeric value
+#' @description Dummy function to test roxygen2. It adds 3.0 to a double.
+#' @export
+#' @examples roxcpp3_(1.0)
+roxcpp3_ <- function(x) {
+	.Call(`_cpp11test_roxcpp3_`, x)
+}
+
+#' @title Roxygenise C++ function IV
+#' @param x numeric value
+#' @description Dummy function to test roxygen2. It adds 4.0 to a double.
+#' @export
+#' @examples roxcpp4_(1.0)
+roxcpp4_ <- function(x) {
+	.Call(`_cpp11test_roxcpp4_`, x)
+}
+
+#' @title Roxygenise C++ function V
+#' @param x numeric value
+#' @description Dummy function to test roxygen2. It adds 5.0 to a double.
+#' @export
+#' @examples roxcpp5_(1.0)
+roxcpp5_ <- function(x) {
+	.Call(`_cpp11test_roxcpp5_`, x)
+}
+
+notroxcpp6_ <- function(x) {
+  .Call(`_cpp11test_notroxcpp6_`, x)
+}
+
+#' @title Roxygenise C++ function VII
+#' @param x numeric value
+#' @description Dummy function to test roxygen2. It adds 7.0 to a double.
+#' @export
+#' @examples
+#' my_fun <- function(x) {
+#'   roxcpp7_(x)
+#' }
+#' @seealso \code{\link{roxcpp1_}}
+roxcpp7_ <- function(x) {
+	.Call(`_cpp11test_roxcpp7_`, x)
+}
+
 cpp11_safe_ <- function(x_sxp) {
   .Call(`_cpp11test_cpp11_safe_`, x_sxp)
 }

cpp11test/man/roxcpp2_.Rd

@@ -303,6 +303,55 @@ extern "C" SEXP _cpp11test_rcpp_release_(SEXP n) {
     return R_NilValue;
   END_CPP11
 }
+// roxygen1.cpp
+double notroxcpp1_(double x);
+extern "C" SEXP _cpp11test_notroxcpp1_(SEXP x) {
+  BEGIN_CPP11
+    return cpp11::as_sexp(notroxcpp1_(cpp11::as_cpp<cpp11::decay_t<double>>(x)));
+  END_CPP11
+}
+// roxygen1.cpp
+double roxcpp2_(double x);
+extern "C" SEXP _cpp11test_roxcpp2_(SEXP x) {
+  BEGIN_CPP11
+    return cpp11::as_sexp(roxcpp2_(cpp11::as_cpp<cpp11::decay_t<double>>(x)));
+  END_CPP11
+}
+// roxygen2.cpp
+double roxcpp3_(double x);
+extern "C" SEXP _cpp11test_roxcpp3_(SEXP x) {
+  BEGIN_CPP11
+    return cpp11::as_sexp(roxcpp3_(cpp11::as_cpp<cpp11::decay_t<double>>(x)));
+  END_CPP11
+}
+// roxygen2.cpp
+double roxcpp4_(double x);
+extern "C" SEXP _cpp11test_roxcpp4_(SEXP x) {
+  BEGIN_CPP11
+    return cpp11::as_sexp(roxcpp4_(cpp11::as_cpp<cpp11::decay_t<double>>(x)));
+  END_CPP11
+}
+// roxygen3.cpp
+double roxcpp5_(double x);
+extern "C" SEXP _cpp11test_roxcpp5_(SEXP x) {
+  BEGIN_CPP11
+    return cpp11::as_sexp(roxcpp5_(cpp11::as_cpp<cpp11::decay_t<double>>(x)));
+  END_CPP11
+}
+// roxygen3.cpp
+double notroxcpp6_(double x);
+extern "C" SEXP _cpp11test_notroxcpp6_(SEXP x) {
+  BEGIN_CPP11
+    return cpp11::as_sexp(notroxcpp6_(cpp11::as_cpp<cpp11::decay_t<double>>(x)));
+  END_CPP11
+}
+// roxygen3.cpp
+double roxcpp7_(double x);
+extern "C" SEXP _cpp11test_roxcpp7_(SEXP x) {
+  BEGIN_CPP11
+    return cpp11::as_sexp(roxcpp7_(cpp11::as_cpp<cpp11::decay_t<double>>(x)));
+  END_CPP11
+}
 // safe.cpp
 SEXP cpp11_safe_(SEXP x_sxp);
 extern "C" SEXP _cpp11test_cpp11_safe_(SEXP x_sxp) {
@@ -574,6 +623,11 @@ static const R_CallMethodDef CallEntries[] = {
     {"_cpp11test_rcpp_sum_int_for_",        (DL_FUNC) &_cpp11test_rcpp_sum_int_for_,        1},
     {"_cpp11test_remove_altrep",            (DL_FUNC) &_cpp11test_remove_altrep,            1},
     {"_cpp11test_row_sums",                 (DL_FUNC) &_cpp11test_row_sums,                 1},
+    {"_cpp11test_roxcpp2_",                 (DL_FUNC) &_cpp11test_roxcpp2_,                 1},
+    {"_cpp11test_roxcpp3_",                 (DL_FUNC) &_cpp11test_roxcpp3_,                 1},
+    {"_cpp11test_roxcpp4_",                 (DL_FUNC) &_cpp11test_roxcpp4_,                 1},
+    {"_cpp11test_roxcpp5_",                 (DL_FUNC) &_cpp11test_roxcpp5_,                 1},
+    {"_cpp11test_roxcpp7_",                 (DL_FUNC) &_cpp11test_roxcpp7_,                 1},
     {"_cpp11test_string_proxy_assignment_", (DL_FUNC) &_cpp11test_string_proxy_assignment_, 0},
     {"_cpp11test_string_push_back_",        (DL_FUNC) &_cpp11test_string_push_back_,        0},
     {"_cpp11test_sum_dbl_accumulate2_",     (DL_FUNC) &_cpp11test_sum_dbl_accumulate2_,     1},

cpp11test/man/roxcpp3_.Rd

@@ -0,0 +1,22 @@
+#include "cpp11/doubles.hpp"
+using namespace cpp11;
+
+// Test: not documented + documented
+
+// Not Roxygenised C++ function I
+[[cpp11::register]] double notroxcpp1_(double x) {
+  double y = x + 1.0;
+  return y;
+}
+
+/* roxygen start
+@title Roxygenise C++ function II
+@param x numeric value
+@description Dummy function to test roxygen2. It adds 2.0 to a double.
+@export
+@examples roxcpp2_(1.0)
+roxygen end */
+[[cpp11::register]] double roxcpp2_(double x) {
+  double y = x + 2.0;
+  return y;
+}