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ShatterSeek on other references #40

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fabrimafe opened this issue Sep 24, 2023 · 0 comments
Open

ShatterSeek on other references #40

fabrimafe opened this issue Sep 24, 2023 · 0 comments

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@fabrimafe
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Dear Shatterseek team,
I would like to ask if Shatterseek can be used on other references. In principles, all statistical tests seem portable. However, I see that for some criteria (e.g. the chromosomal enrichment of breakpoints) you also correct for genome-specific features like mappability. And of course, the only chromosomes supported are 1-22,X.

Can one try to tweak it to make it work on other reference genomes other than humans, for example tweaking chromosome names?
Thanks!

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