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README.Rmd
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README.Rmd
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---
output: github_document
---
```{r setup, include=FALSE}
knitr::opts_chunk$set(echo = TRUE)
```
<!-- README.md is generated from README.Rmd. Please edit that file -->
# Inside Dogfish Stock Assessment for British Columbia
## Install dependencies
### GitHub R packages
```{r github-packages, eval=FALSE}
# install.packages("remotes")
remotes::install_github("pbs-assess/gfdata")
remotes::install_github("pbs-assess/gfplot")
remotes::install_github("r4ss/r4ss")
remotes::install_github("Cole-Monnahan-NOAA/adnuts")
remotes::install_github("PIFSCstockassessments/ss3diags")
```
### Stock Synthesis 3.30
- Download the latest release of [Stock Synthesis 3.30](https://github.com/nmfs-ost/ss3-source-code?tab=readme-ov-file)
- Confirm that the ss3 executable is available in the R `$PATH`, for example using `r4ss::check_exe()`