submit

#!/bin/bash
source /usr/global/Anaconda/2019-10/etc/profile.d/conda.sh

USR=`logname`

BACKUP=true;
CHECK_USER=false;
SCRIPT_ARGS=()

for arg in "$@"; do
  case "$arg" in
    "--no-backup")  BACKUP=false;;
    "--ignore-user") CHECK_USER=false;
                     BACKUP=false;;
    "--help") echo "usage: submit {--ignore-user --no-backup}";;
    *)SCRIPT_ARGS+=("$arg");;
  esac
done

if $CHECK_USER; then
    case $USER in
        "RAM_maint") INDEX="/protocols/r1.json";;
        "maint") INDEX="/protocols/ltp.json";;
        * ) echo "This script is meant to be run from maint or RAM_maint not $USR";
            exit;;
    esac
fi

if $BACKUP; then
    REPO="$HOME/index_file_tracker/"
    echo "$REPO"
    TIME=$(date "+%Y.%m.%d at %H.%M.%S")
    cp "$INDEX" "$REPO"

    cd "$REPO"
    # we don't have git >1.8, so change directories
    # git -C "$REPO" add .
    git add .
    git commit -m "Checkpoint for modifications made $TIME"
    cd -
fi


if [[ ${HOSTNAME:0:4} != "node" ]]; then
    while true; do
        echo "This script is best run from a node not the headnode (use qlogin)"
        read -p "Are you sure you want to continue? " yn
        case $yn in
            [Nn]* ) exit;;
            [Yy]* ) break;;
            * ) echo "Please answer y/n";;
        esac
    done
fi

#USER_HOME=`eval echo ~$USR`
#XAUTH_LINE=`xauth -f $USER_HOME/.Xauthority list | tail -1`
#xauth add $XAUTH_LINE
#source ~/.bashrc

# conda activate event_creation

python -m event_creation.submission.convenience "${SCRIPT_ARGS[@]}"