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peppy 0.40.6 and 0.40.7 lead to eido validation error #496

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johanneskoester opened this issue Oct 7, 2024 · 2 comments
Open

peppy 0.40.6 and 0.40.7 lead to eido validation error #496

johanneskoester opened this issue Oct 7, 2024 · 2 comments

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@johanneskoester
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The error is

eido.exceptions.EidoValidationError: EidoValidationError (Validation failed): {"'_samples' is a required property": [{'type': "'_samples' is a required property", 'message': "'_samples' is a required property on instance project", 'sample_name': 'project'}]}

It worked fine before with 0.40.5.

config.yaml:

pep_version: "2.0.0"
sample_table: sample_table.csv

sample_table.csv:

sample_name,protocol
a,test
b,test2
@khoroshevskyi
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khoroshevskyi commented Oct 7, 2024

Hello Johannes,
Can you please try to update eido to a newer version, and check if it helps? (eido == 0.2.4)

We were working on improving eido validation, and we made changes that broke backwards compatibility. (in peppy and eido)

@nsheff
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nsheff commented Oct 11, 2024

This is because the eido conda build is out-of-date.

We need to fix the conda build issue.

Same issue as this: pepkit/eido#78

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3 participants