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In SISTR v1.1.1. the O51 antigen prediction might be jeopardized as confirmed by recent PulseNet submission. The SISTR v1.1.1 in-silico prediction provided IIIb 51:k:z35 while traditional serotyping predicted IIIb 47:k:z35 serovar. SISTR used O51|35 allele for the wzx gene which is ~600 nt and might be truncated as other O51 alleles are of 1220 bp size. In addition, BLAST of this allele identified the top 100% id hit mapping to 47:k:35 serovar with ACCESSION CP053583.1. Removal of this problematic O51|35 allele had resulted in correct in-silico SISTR v1.1.1 serovar prediction (47:k:z35)
Will need to fix this issue in the SISTR database in the next release and run tests against the validation panel again in the Q1 of 2022.
The text was updated successfully, but these errors were encountered:
In SISTR v1.1.1. the O51 antigen prediction might be jeopardized as confirmed by recent PulseNet submission. The SISTR v1.1.1 in-silico prediction provided IIIb 51:k:z35 while traditional serotyping predicted IIIb 47:k:z35 serovar. SISTR used
O51|35
allele for the wzx gene which is ~600 nt and might be truncated as other O51 alleles are of 1220 bp size. In addition, BLAST of this allele identified the top 100% id hit mapping to 47:k:35 serovar with ACCESSION CP053583.1. Removal of this problematicO51|35
allele had resulted in correct in-silico SISTR v1.1.1 serovar prediction (47:k:z35)Will need to fix this issue in the SISTR database in the next release and run tests against the validation panel again in the Q1 of 2022.
The text was updated successfully, but these errors were encountered: