ImportError: cannot import name 'PathLike'

[zhao-xinlu]

I am installed conga in 29. Oct 2022 following conga readme.md.

conda create -n conga_new_env ipython python=3.6
conda activate conga_new_env # or: "source activate conga_new_env" depending on your conda setup
conda install seaborn scikit-learn statsmodels numba pytables
conda install -c conda-forge python-igraph leidenalg louvain notebook
conda install -c intel tbb # optional
pip install scanpy
pip install fastcluster # optional
conda install pyyaml #optional for using yaml-formatted configuration files for scripts

I activated the conga_new_env, and run code from "Seurat_to_Conga.ipynb". It report an errer :
"Seurat_to_Conga.ipynb"
when i run the first line
"import scanpy as sc"

My python version info is:
Python 3.6.15 | packaged by conda-forge | (default, Dec 3 2021, 18:49:41)
IPython 7.16.1 -- An enhanced Interactive Python.

Mybe the python version is too old?

Thanks.

[sschattgen]

PathLike was implemented in 3.6 so I'm not sure if that's the issue. https://docs.python.org/3/library/os.html#os.PathLike
Nonetheless, you can certainly try moving up in version and see if that helps. I use 3.8 currently, myself.