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<!doctype html>
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<meta charset="utf-8"/>
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<title>
Phil Arevalo
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<p class = "alignright"><img src = "img/phd.jpg" height=200 width =200 alt="Human smiling next to phylogeny of honeycreepers"></p>
<p class="alignleft"><h1><br><br><b>Phil Arevalo</b></h1>
<small>Postdoctoral Fellow, University of Chicago<br>
parevalo [at] uchicago [dot] edu</small>
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<h1><a href="javascript:void(0);" onclick="toggle('About');" class="sectionheading">About</a></h1>
<div class="rightindent" id ="About" style="display:none">
<p>Currently, I'm a Postdoctoral Fellow at the University of Chicago. Working with <a href="https://cobeylab.uchicago.edu/">Sarah Cobey</a>, I am building models to better understand how factors like vaccination and an individual's infection history affect their susceptibility to influenza infection. This heterogeniety of host immune systems may, in turn, influence the evolution of the influenza virus itself. I hope that the models I'm building will give us a clearer picture of this evolutionary interplay between host and pathogen. </p>
<p>I'm a recent alumni of the <a href = "http://microbiology.mit.edu">Microbiology Graduate Program</a> at MIT. Working with <a href = "http://polzlab.mit.edu">Martin Polz</a>, I used the tools of microbial genomics to better understand how horizontal gene transfer shapes microbial communities.</p>
<p>Prior to my time at MIT, I completed my undergraduate degree at Brown University in Applied Mathematics-Biology and Classics doing work with <a href = "http://www.umaine.edu/marine/people/profile/jeremy_rich">Jeremy Rich</a> to understand the community composition of anammox bacteria. I've also worked as a research assistant in the lab of <a href = "http://www.whoi.edu/page.do?pid=18956">Stefan Sievert</a> at the Woods Hole Oceanographic Institution using high throughput sequencing to investigate the microbial communities at hydrothermal vents and oxygen minimum zones.</p>
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<h1><a href="javascript:void(0);" onclick="toggle('Code');" class="sectionheading">Code</a></h1>
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<p>You can find some of the code I've written on my <a href="https://github.com/philarevalo">github</a>.</p>
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<h1><a href="javascript:void(0);" onclick="toggle('Publications');" class="sectionheading">Publications</a></h1>
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<p><i>* indicates equal contribution of authors</i></p>
<p><b>Arevalo P.*</b>, VanInsberghe D.*, Elsherbini J., Gore J., Polz M.F. (2019). <i><a href="https://www.cell.com/cell/fulltext/S0092-8674(19)30736-6?_returnURL=https%3A%2F%2Flinkinghub.elsevier.com%2Fretrieve%2Fpii%2FS0092867419307366%3Fshowall%3Dtrue">A reverse ecology approachbased on a biological definition of microbial populations. </a></i>Cell, 178(4).doi:10.1016/j.cell.2019.06.03</p>
<p><b>Arevalo P.</b>, McLean H.Q., Belongia E.A., Cobey S. (2019). <i><a href="https://www.medrxiv.org/content/10.1101/19001875v1">Earliest infections predict the age distribution of seasonal influenza A cases.</a></i> medRxiv. doi:10.1101/19001875</p>
<p>Chase A.B., <b>Arevalo P.</b>, Brodie E.L., Polz M.F., Karaoz U., Martiny J.B.H. (2019). <i><a href="https://www.biorxiv.org/content/10.1101/644468v2">Sympatric and allopatric differentiation delineates population structure in free-living terrestrial bacteria.</a></i> bioRxiv. doi:10.1101/644468</p>
<p> Polzin J., <b>Arevalo P.</b>, Nussbaumer T., Polz M.F, Bright M. (2019). <i><a href="https://royalsocietypublishing.org/doi/full/10.1098/rspb.2018.1281">Polyclonal symbiont populations in hydrothermal vent tubeworms and the environment</a></i>. Proceedings of the Royal Society B. doi:10.1098/rspb.2018.1281</p>
<p><b>Arevalo P.</b>, VanInsberghe D., Polz M.F. (2018) <i><a href="https://link.springer.com/chapter/10.1007/13836_2018_46">A Reverse Ecology Framework for Bacteria and Archaea</a></i>. In: Population Genomics: Microorganisms. Springer, Cham. doi:10.1007/13836_2018_46</p>
<p>Kauffman, K., Hussain, F., Yang, J., <b>Arevalo, P.</b>, Brown, J., Cutler, M., Kelly, L., Polz, M.F. (2018). <i><a href="https://www.nature.com/articles/nature25474">A major lineage of non-tailed dsDNA viruses as unrecognized killers of marine bacteria</a></i>. Nature. doi:10.1038/nature25474</p>
<p>Rich J.J., <b>Arevalo P.</b>, Chang B.X., Devol A.H., Ward B.B. (2018). <i><a href="https://umaine.edu/marine/faculty/jeremy-rich/">Anaerobic ammonium oxidation (anammox) and denitrification in Peru margin sediments</a></i>. Journal of Marine Systems. doi:10.1016/j.jmarsys.2018.09.007
<p>Burks D.J., Norris, S., Kauffman, K.M., Joy, A., <b>Arevalo, P.</b>, Azad, R.K., Wildschutte, H. (2017). <i><a href="https://onlinelibrary.wiley.com/doi/abs/10.1002/mbo3.504">Environmental vibrios represent a source of antagonistic compounds that inhibit pathogenic Vibrio cholerae and Vibrio parahaemolyticus strains</a></i>. MicrobiologyOpen, 6(5). doi:10.1002/mbo3.504</p>
<p>Takemura, A.F., Corzett, C.H., Hussain, F., <b>Arevalo, P.</b>, Datta, M., Yu, X., Le Roux, F., Polz, M.F. (2017). <i><a href="http://onlinelibrary.wiley.com/doi/10.1111/1462-2920.13765/full">Natural resource landscapes of a marine bacterium reveal distinct fitness-determining genes across the genome</a></i>. Environmental Microbiology, 19:2422–2433. doi:10.1111/1462-2920.13765</p>
<p>Hehemann, J.-H.*, <b> Arevalo, P.*</b>, Datta, M.S.*, Yu, X., Corzett, C., Preheim., S.P., Henschel, A., Timberlake, S., Alm, E.J., Polz, M.F. (2016). <i><a href="http://www.nature.com/ncomms/2016/160922/ncomms12860/full/ncomms12860.html">Adaptive radiation by waves of gene transfer leads to fine-scale resource partitioning in marine microbes</a></i>. Nature Communications, 7. Article number: 12860. doi:10.1038/ncomms12860.</p>
<p>Chase, A.B., <b>Arevalo, P.</b>, Polz, M.F., Berlemont, R., Martiny, J.B.H. (2016). <i><a href='http://journal.frontiersin.org/article/10.3389/fmicb.2016.01874/full'>Evidence for ecological flexibility in the cosmopolitan genus Curtobacterium</a></i>. Frontiers in Microbiology, 7:1874. doi:10.3389/fmicb.2016.01874</p>
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<h1><a href="javascript:void(0);" onclick="location.href = 'CV/CV.pdf';" class="sectionheading">CV</a></h1>
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Last updated 7 November 2019. Tree favicon created with <a href="http://itol.embl.de">iTol</a>. Website template modified from <a href = "http://www.natecermak.net">Nate Cermak</a>
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