Makefile

## --------------------------
## Adjust if and as necessary
## --------------------------
ROBOT = ./bin/robot
DEPLOY_PATH = ./docs
ONTS = $(wildcard *.ofn)
PROFILES = Full DL EL RL QL
CATALOG = catalog-for-checks.xml

## --------------------------
## The following should adjust automatically.
## --------------------------
ROBOT_VERSION = `$(ROBOT) -V`
VERSIONED_ONTS = $(shell grep versionIRI *.owl | sed -e 's;.*phyloref.org/\(.*\)"/>;\1;')
VERSIONED_TARGETS = $(addprefix $(DEPLOY_PATH)/,$(VERSIONED_ONTS))
REPORTS = $(foreach f,$(ONTS:.ofn=.IsIn),$(addprefix $(f),$(PROFILES)))

## --------------------------
## Targets:
## - all: same as deploy
## - deploy: generate OWL and copy OFN and OWL to DEPLOY_PATH
## - deploy-versions: copy OFN and OWL to versioned directory under DEPLOY_PATH
## - check: check minimum profile requirements for primary ontologies
## - check-strict: check aspired-to profile requirements for primary ontologies
## - clean-checks: clean up profile validation reports
##
## Use make -k ("keep going") to run through all checks rather than stop
## after the first failure.
## --------------------------

all: deploy

deploy: $(addprefix $(DEPLOY_PATH)/,$(ONTS)) $(addprefix $(DEPLOY_PATH)/,$(ONTS:.ofn=.owl))

deploy-versions: $(ONTS:.ofn=.owl) $(VERSIONED_TARGETS)

check: check-tcan check-phyloref
check-strict: check-strict-tcan check-strict-phyloref
check-tcan: tcan.IsInDL
check-strict-tcan: check-tcan tcan.IsInEL
check-phyloref: phyloref.IsInFull
check-strict-phyloref: check-phyloref phyloref.IsInDL

clean-checks:
	$(RM) $(REPORTS)

$(DEPLOY_PATH)/%.ofn : %.ofn
	cp -p $< $@

$(DEPLOY_PATH)/%.owl : %.owl
	cp -p $< $@

%.owl : %.ofn
	$(ROBOT) \
		annotate --input $< \
		         --annotation rdfs:comment "Generated by $(ROBOT_VERSION) from $<" \
		convert --output $@

$(VERSIONED_TARGETS) : deploy
	mkdir -p $(dir $@)
	cp -p $(notdir $@) $@
	cp -p $(notdir $(@:.owl=.ofn)) $(@:.owl=.ofn)

$(REPORTS) :
	$(ROBOT) validate-profile --profile $(subst .IsIn,,$(suffix $@)) \
		--input $(basename $@).ofn --output $@ \
		--catalog $(CATALOG)

.PHONY: check check-strict check-tcan check-phyloref clean