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Utilize sequence multiplicities #5

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lczech opened this issue Oct 5, 2017 · 0 comments
Open

Utilize sequence multiplicities #5

lczech opened this issue Oct 5, 2017 · 0 comments
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@lczech
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lczech commented Oct 5, 2017

Although non-standard, many sequence file preprocessing steps add meta-data to the sequence name. For example, in fasta, one often sees

>name_1234

or

>name;size=1234

in order to note the abundance of the sequence. Such formats are used e.g., by swarm and vsearch.

It would be helpful if epa-ng picks this information up and uses it as multiplicity in the result jplace file.

@pierrebarbera pierrebarbera self-assigned this Oct 5, 2017
@pierrebarbera pierrebarbera added this to the v0.2.0.beta milestone Oct 5, 2017
@pierrebarbera pierrebarbera modified the milestones: v0.2.0-beta, v0.3.0-beta Feb 20, 2018
@pierrebarbera pierrebarbera removed this from the v0.3.0-beta milestone Nov 28, 2018
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