New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

HCP pipeline expects bval/bvec to be in one/three lines #10

Open

tashrifbillah opened this issue Mar 29, 2023 · 0 comments

tashrifbillah commented Mar 29, 2023

HCPpipelines/DiffusionPreprocessing/scripts/basic_preproc_best_b0.sh

Lines 274 to 275 in 1334b35

    
           echo $best_pos_bval $(paste -d' ' ${rawdir}/Pos.bval ${rawdir}/Neg.bval) >${rawdir}/Pos_Neg.bvals 
        
           paste -d' ' ${rawdir}/zero.bvecs ${rawdir}/Pos.bvec ${rawdir}/Neg.bvec >${rawdir}/Pos_Neg.bvecs

This is why it is failing with Goldstein data because the latter has N lines in bvals (Nx1) and bvecs (Nx3).

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment