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Clarification of ingroup_n and outgroup_n in 'enrichment_comparison' (Fix code) #39

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HarkiratSohi opened this issue Jan 10, 2023 · 0 comments

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@HarkiratSohi
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HarkiratSohi commented Jan 10, 2023

Currently, in the output measures (results) from the 'enrichement_comparison' option,
ingroup_n gives all occurances of pathway members in all samples in group 1 (condition 1). Similarly, outgroup_n gives all occurances of pathway members in all samples in group 2 (condition 2).

That means if there are 10 proteins in the pathway and 20 samples the ingroup_n will be 200. This is not very useful and it’s confusing because that’s not how other enrichment methods in leapR work.

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