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<!DOCTYPE html>
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
<meta charset="utf-8" />
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
<meta name="generator" content="pandoc" />
<meta name="author" content="Paul Oldham" />
<title>Master Data Management</title>
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The Model
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<h1 class="title toc-ignore">Master Data Management</h1>
<h4 class="author"><em>Paul Oldham</em></h4>
<h4 class="date"><em>29/07/2018</em></h4>
</div>
<p>This document aims to support Master Data Management planning by identifying the main data sources for development of a Monitoring System for Access and Benefit Sharing. The table below can be downloaded as a csv file <a href="https://github.com/poldham/abs_permits/blob/gh-pages/mdm.zip?raw=true">here</a>.</p>
<table>
<thead>
<tr class="header">
<th align="left">category</th>
<th align="left">source</th>
<th align="left">type</th>
<th align="left">url</th>
<th align="left">r</th>
<th align="left">python</th>
<th align="left">description</th>
</tr>
</thead>
<tbody>
<tr class="odd">
<td align="left">geographic</td>
<td align="left">GBIF</td>
<td align="left">api</td>
<td align="left"><a href="https://www.gbif.org/developer/maps" class="uri">https://www.gbif.org/developer/maps</a></td>
<td align="left">NA</td>
<td align="left">NA</td>
<td align="left">Mapping API for taxonomic data from GBIF</td>
</tr>
<tr class="even">
<td align="left">geographic</td>
<td align="left">geonames</td>
<td align="left">text</td>
<td align="left"><a href="http://download.geonames.org/export/dump/allCountries.zip" class="uri">http://download.geonames.org/export/dump/allCountries.zip</a></td>
<td align="left">NA</td>
<td align="left">NA</td>
<td align="left">11 million georeferences place names.Field headings in main page read me</td>
</tr>
<tr class="odd">
<td align="left">geographic</td>
<td align="left">google</td>
<td align="left">api</td>
<td align="left"><a href="https://cloud.google.com/maps-platform/" class="uri">https://cloud.google.com/maps-platform/</a></td>
<td align="left">NA</td>
<td align="left">NA</td>
<td align="left">maps and places services</td>
</tr>
<tr class="even">
<td align="left">literature</td>
<td align="left">crossref</td>
<td align="left">api</td>
<td align="left"><a href="https://github.com/CrossRef/rest-api-doc" class="uri">https://github.com/CrossRef/rest-api-doc</a></td>
<td align="left">rcrossref</td>
<td align="left">habanero</td>
<td align="left">literature metadata, restful, json, R and python packages, solr search syntax</td>
</tr>
<tr class="odd">
<td align="left">literature</td>
<td align="left">core.ac.uk</td>
<td align="left">api</td>
<td align="left"><a href="https://core.ac.uk/docs/#!/all/search" class="uri">https://core.ac.uk/docs/#!/all/search</a></td>
<td align="left">rcoreoa</td>
<td align="left">pyoacore</td>
<td align="left">full texts of scientific literature</td>
</tr>
<tr class="even">
<td align="left">literature</td>
<td align="left">unpaywall</td>
<td align="left">api</td>
<td align="left"><a href="https://unpaywall.org/products/api" class="uri">https://unpaywall.org/products/api</a></td>
<td align="left">roadoi</td>
<td align="left">NA</td>
<td align="left">identify open access publications in crossref</td>
</tr>
<tr class="odd">
<td align="left">literature</td>
<td align="left">Biodiversity Heritage Library</td>
<td align="left">api</td>
<td align="left"><a href="https://biodivlib.wikispaces.com/Developer+Tools+and+API" class="uri">https://biodivlib.wikispaces.com/Developer+Tools+and+API</a></td>
<td align="left">rbhl</td>
<td align="left">NA</td>
<td align="left">Historic biodiversity publications</td>
</tr>
<tr class="even">
<td align="left">literature</td>
<td align="left">Open Academic Graph</td>
<td align="left">text</td>
<td align="left"><a href="https://aminer.org/open-academic-graph" class="uri">https://aminer.org/open-academic-graph</a></td>
<td align="left">NA</td>
<td align="left">NA</td>
<td align="left">metadata for 330 million scientific publications</td>
</tr>
<tr class="odd">
<td align="left">patent</td>
<td align="left">patentsview</td>
<td align="left">text</td>
<td align="left"><a href="http://www.patentsview.org/download/" class="uri">http://www.patentsview.org/download/</a></td>
<td align="left">NA</td>
<td align="left">NA</td>
<td align="left">US patent data in table format</td>
</tr>
<tr class="even">
<td align="left">patent</td>
<td align="left">patentsview</td>
<td align="left">api</td>
<td align="left"><a href="http://www.patentsview.org/api/patent.html" class="uri">http://www.patentsview.org/api/patent.html</a></td>
<td align="left">NA</td>
<td align="left">NA</td>
<td align="left">US patents end point. Limited text search, lookup for inventors or applicants</td>
</tr>
<tr class="odd">
<td align="left">patent</td>
<td align="left">USPTO</td>
<td align="left">xml</td>
<td align="left"><a href="http://patents.reedtech.com/parbft.php" class="uri">http://patents.reedtech.com/parbft.php</a></td>
<td align="left">NA</td>
<td align="left">NA</td>
<td align="left">US patent applications full text</td>
</tr>
<tr class="even">
<td align="left">patent</td>
<td align="left">USPTO</td>
<td align="left">xml</td>
<td align="left"><a href="http://patents.reedtech.com/pgrbft.php" class="uri">http://patents.reedtech.com/pgrbft.php</a></td>
<td align="left">NA</td>
<td align="left">NA</td>
<td align="left">US granted full text</td>
</tr>
<tr class="odd">
<td align="left">patent</td>
<td align="left">abspat</td>
<td align="left">text</td>
<td align="left"><a href="https://storage.googleapis.com/owa/countries_index.zip" class="uri">https://storage.googleapis.com/owa/countries_index.zip</a></td>
<td align="left">NA</td>
<td align="left">NA</td>
<td align="left">machine learning resource, patent documents with country names</td>
</tr>
<tr class="even">
<td align="left">patent</td>
<td align="left">abspat</td>
<td align="left">text</td>
<td align="left"><a href="https://storage.googleapis.com/owa/abspat_index.zip" class="uri">https://storage.googleapis.com/owa/abspat_index.zip</a></td>
<td align="left">NA</td>
<td align="left">NA</td>
<td align="left">machine learning resource, patent documents with species names</td>
</tr>
<tr class="odd">
<td align="left">patent</td>
<td align="left">EPO</td>
<td align="left">xml</td>
<td align="left"><a href="mailto:csc@epo.org">csc@epo.org</a></td>
<td align="left">NA</td>
<td align="left">NA</td>
<td align="left">machine learning, Backfile to be ordered</td>
</tr>
<tr class="even">
<td align="left">patent</td>
<td align="left">WIPO</td>
<td align="left">xml</td>
<td align="left"><a href="http://www.wipo.int/patentscope/en/data/" class="uri">http://www.wipo.int/patentscope/en/data/</a></td>
<td align="left">NA</td>
<td align="left">NA</td>
<td align="left">machine learning, To be ordered 3900 swiss francs</td>
</tr>
<tr class="odd">
<td align="left">patent</td>
<td align="left">EPO</td>
<td align="left">api</td>
<td align="left"><a href="http://www.epo.org/searching-for-patents/data/web-services/ops.html#tab-1" class="uri">http://www.epo.org/searching-for-patents/data/web-services/ops.html#tab-1</a></td>
<td align="left">NA</td>
<td align="left">NA</td>
<td align="left">lookup inventor and applicant names, xml/json</td>
</tr>
<tr class="even">
<td align="left">patent</td>
<td align="left">EPO</td>
<td align="left">database</td>
<td align="left"><a href="https://forms.epo.org/service-support/ordering/patstat-order-form.html" class="uri">https://forms.epo.org/service-support/ordering/patstat-order-form.html</a></td>
<td align="left">NA</td>
<td align="left">NA</td>
<td align="left">PATSTAT Global (raw data) - 2018, SQL database</td>
</tr>
<tr class="odd">
<td align="left">patent</td>
<td align="left">India Patent Office</td>
<td align="left">NA</td>
<td align="left">NA</td>
<td align="left">NA</td>
<td align="left">NA</td>
<td align="left">Full text of india patent documents</td>
</tr>
<tr class="even">
<td align="left">researcher</td>
<td align="left">National Biodiversity Authority</td>
<td align="left">NA</td>
<td align="left">NA</td>
<td align="left">NA</td>
<td align="left">NA</td>
<td align="left">permit applicant data</td>
</tr>
<tr class="odd">
<td align="left">researcher</td>
<td align="left">ORCID</td>
<td align="left">api</td>
<td align="left"><a href="https://orcid.org/organizations/integrators/API" class="uri">https://orcid.org/organizations/integrators/API</a></td>
<td align="left">rorcid</td>
<td align="left">python-orcid</td>
<td align="left">enables researcher login and automated retrieval of public profile and publications. R and Python packages.</td>
</tr>
<tr class="even">
<td align="left">taxonomic</td>
<td align="left">GBIF</td>
<td align="left">text</td>
<td align="left"><a href="http://api.gbif.org/v1/occurrence/download/request/0048726-180508205500799.zip" class="uri">http://api.gbif.org/v1/occurrence/download/request/0048726-180508205500799.zip</a></td>
<td align="left">NA</td>
<td align="left">NA</td>
<td align="left">India taxonomic data</td>
</tr>
<tr class="odd">
<td align="left">taxonomic</td>
<td align="left">GBIF</td>
<td align="left">text</td>
<td align="left"><a href="http://api.gbif.org/v1/occurrence/download/request/0048727-180508205500799.zip" class="uri">http://api.gbif.org/v1/occurrence/download/request/0048727-180508205500799.zip</a></td>
<td align="left">NA</td>
<td align="left">NA</td>
<td align="left">India full taxonomic data</td>
</tr>
<tr class="even">
<td align="left">taxonomic</td>
<td align="left">GBIF</td>
<td align="left">api</td>
<td align="left"><a href="https://www.gbif.org/developer/summary" class="uri">https://www.gbif.org/developer/summary</a></td>
<td align="left">rgbif</td>
<td align="left">pygbif</td>
<td align="left">GBIF Restful API</td>
</tr>
<tr class="odd">
<td align="left">taxonomic</td>
<td align="left">BSI</td>
<td align="left">NA</td>
<td align="left">NA</td>
<td align="left">NA</td>
<td align="left">NA</td>
<td align="left">Biological Survey of India</td>
</tr>
<tr class="even">
<td align="left">taxonomic</td>
<td align="left">IUCN</td>
<td align="left">api</td>
<td align="left"><a href="http://apiv3.iucnredlist.org/" class="uri">http://apiv3.iucnredlist.org/</a></td>
<td align="left">rredlist</td>
<td align="left">NA</td>
<td align="left">API for redlist of endangered species</td>
</tr>
<tr class="odd">
<td align="left">taxonomic</td>
<td align="left">BOLD</td>
<td align="left">api</td>
<td align="left"><a href="http://v4.boldsystems.org/index.php/api_home" class="uri">http://v4.boldsystems.org/index.php/api_home</a></td>
<td align="left">bold</td>
<td align="left">pybold</td>
<td align="left">API to Barcode of Life Databse</td>
</tr>
<tr class="even">
<td align="left">taxonomic</td>
<td align="left">GenBank</td>
<td align="left">api</td>
<td align="left"><a href="https://www.ncbi.nlm.nih.gov/home/develop/api/" class="uri">https://www.ncbi.nlm.nih.gov/home/develop/api/</a></td>
<td align="left">rentrez</td>
<td align="left">Biopython</td>
<td align="left">DNA sequence data</td>
</tr>
<tr class="odd">
<td align="left">taxonomic</td>
<td align="left">World Register of Marine Species</td>
<td align="left">api</td>
<td align="left"><a href="http://www.marinespecies.org/aphia.php?p=webservice" class="uri">http://www.marinespecies.org/aphia.php?p=webservice</a></td>
<td align="left">worrms/taxize</td>
<td align="left">NA</td>
<td align="left">marine species data</td>
</tr>
<tr class="even">
<td align="left">taxonomic</td>
<td align="left">Ocean Biogeographic Information System</td>
<td align="left">api</td>
<td align="left"><a href="http://www.iobis.org/manual/api/" class="uri">http://www.iobis.org/manual/api/</a></td>
<td align="left">robis</td>
<td align="left">pyobis</td>
<td align="left">Marine species data</td>
</tr>
<tr class="odd">
<td align="left">taxonomic</td>
<td align="left">Global Names Index</td>
<td align="left">api</td>
<td align="left"><a href="http://gni.globalnames.org/" class="uri">http://gni.globalnames.org/</a></td>
<td align="left">taxize</td>
<td align="left">NA</td>
<td align="left">All known species names including spelling variants</td>
</tr>
<tr class="even">
<td align="left">taxonomic</td>
<td align="left">Global Names Finder</td>
<td align="left">GO</td>
<td align="left"><a href="https://github.com/gnames/gnfinder" class="uri">https://github.com/gnames/gnfinder</a></td>
<td align="left">NA</td>
<td align="left">NA</td>
<td align="left">Go programme for identifying species names in texts</td>
</tr>
<tr class="odd">
<td align="left">taxonomic</td>
<td align="left">ZSI</td>
<td align="left">NA</td>
<td align="left">NA</td>
<td align="left">NA</td>
<td align="left">NA</td>
<td align="left">Zoological Survey of India</td>
</tr>
<tr class="even">
<td align="left">taxonomic</td>
<td align="left">French Institute of Pondicherry</td>
<td align="left">NA</td>
<td align="left">NA</td>
<td align="left">NA</td>
<td align="left">NA</td>
<td align="left">NA</td>
</tr>
<tr class="odd">
<td align="left">taxonomic</td>
<td align="left">WII</td>
<td align="left">NA</td>
<td align="left">NA</td>
<td align="left">NA</td>
<td align="left">NA</td>
<td align="left">NA</td>
</tr>
<tr class="even">
<td align="left">taxonomic</td>
<td align="left">ICAR</td>
<td align="left">NA</td>
<td align="left">NA</td>
<td align="left">NA</td>
<td align="left">NA</td>
<td align="left">NA</td>
</tr>
<tr class="odd">
<td align="left">taxonomic</td>
<td align="left">DST/UGC</td>
<td align="left">NA</td>
<td align="left">NA</td>
<td align="left">NA</td>
<td align="left">NA</td>
<td align="left">NA</td>
</tr>
<tr class="even">
<td align="left">taxonomic</td>
<td align="left">India Institute of Sciences</td>
<td align="left">NA</td>
<td align="left">NA</td>
<td align="left">NA</td>
<td align="left">NA</td>
<td align="left">NA</td>
</tr>
<tr class="odd">
<td align="left">traditional knowledge</td>
<td align="left">TKDL</td>
<td align="left">NA</td>
<td align="left"><a href="http://www.tkdl.res.in/tkdl/langdefault/common/Home.asp?GL=Eng" class="uri">http://www.tkdl.res.in/tkdl/langdefault/common/Home.asp?GL=Eng</a></td>
<td align="left">NA</td>
<td align="left">NA</td>
<td align="left">traditional knowledge data for India</td>
</tr>
<tr class="even">
<td align="left">traditional knowledge</td>
<td align="left">FRHL</td>
<td align="left">NA</td>
<td align="left"><a href="http://envis.frlht.org/bot_search" class="uri">http://envis.frlht.org/bot_search</a></td>
<td align="left">NA</td>
<td align="left">NA</td>
<td align="left">Database of medicinal plants in India</td>
</tr>
</tbody>
</table>
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