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do any of these proteins have PRints or smart domains? #3762

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ValWood opened this issue Oct 27, 2024 · 2 comments
Open

do any of these proteins have PRints or smart domains? #3762

ValWood opened this issue Oct 27, 2024 · 2 comments
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@ValWood
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ValWood commented Oct 27, 2024

https://www.pombase.org/results/from/id/cbf69340-87d8-4110-96eb-25252d2da43f

@kimrutherford kimrutherford self-assigned this Oct 27, 2024
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kimrutherford commented Oct 27, 2024

PRINTS domains:

  • SPAC227.07c covered bysuperfamily
  • SPBC1685.03 covered by many
  • SPBC2G5.06c

Smart domains:

  • SPAC12G12.10
  • SPAC227.07c
  • SPAC1687.09
  • SPAC23C4.13
  • SPAC1A6.02
  • SPAP27G11.02
  • SPAC824.06
  • SPAC6B12.12
  • SPAC1B1.01
  • SPAC1556.03
  • SPAC1556.03
  • SPAC2F3.02
  • SPBC11B10.08
  • SPAC16.05c
  • SPAC637.04
  • SPAC22E12.07
  • SPBC660.05
  • SPBC27B12.11c
  • SPBC83.15
  • SPBC3H7.14
  • SPBC23G7.04c
  • SPBP18G5.02
  • SPBC19C7.10
  • SPBC2D10.17
  • SPBC1105.14
  • SPBC26H8.02c
  • SPBC31F10.14c
  • SPBC16C6.01c
  • SPCC330.02
  • SPCC1235.03
  • SPCC1020.09
  • SPCC4B3.15
  • SPMTR.01

@ValWood ValWood transferred this issue from pombase/pombase-chado Oct 28, 2024
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ValWood commented Oct 29, 2024

Smarts quite useful here (except this is obvious from Alphafold anyway , and most people would know the the repeats were there) https://www.pombase.org/gene/SPBC4F6.13c

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