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Segmentation fault (core dumped) #105

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cxlcoc opened this issue Dec 12, 2024 · 1 comment
Open

Segmentation fault (core dumped) #105

cxlcoc opened this issue Dec 12, 2024 · 1 comment

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@cxlcoc
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cxlcoc commented Dec 12, 2024

how to solve this problem?I use the slurm script to run the code as follows:
#!/bin/bash
#SBATCH --job-name=cxl_mi
#SBATCH --partition=debug
#SBATCH --ntasks=1
#SBATCH --cpus-per-task=20
#SBATCH --mem=40G
#SBATCH --time=2400:00:00
#SBATCH --output=/home/lililiang/cxl/jiaoben1/mi.out
#SBATCH --error=/home/lililiang/cxl/jiaoben2/mi.err
#SBATCH --mail-type=END,FAIL
#SBATCH --array=1-20

conda activate mixer

python3 /home/lililiang/cxl/gwas_scz/mixer-1.1/mixer-1.2/mixer-1.2/precimed/mixer.py fit1 --trait1-file /home/lililiang/cxl/gwas_scz/MIXER/SCZ/SCZ_qc_noMHC.csv.gz --out /home/lililiang/cxl/gwas_scz/MIXER/SCZ/SCZ.fit.rep${SLURM_ARRAY_TASK_ID} --extract /home/lililiang/cxl/gwas_scz/mixer-1.1/mixer-main/reference/ldsc/1000G_EUR_Phase3_plink/1000G.EUR.QC.prune_maf0p05_rand2M_r2p8.rep${SLURM_ARRAY_TASK_ID}.snps --bim-file /home/lililiang/cxl/gwas_scz/mixer-1.1/mixer-main/reference/ldsc/1000G_EUR_Phase3_plink/1000G.EUR.QC.@.bim --ld-file /home/lililiang/cxl/gwas_scz/mixer-1.1/mixer-main/reference/ldsc/1000G_EUR_Phase3_plink/1000G.EUR.QC.@.run4.ld --lib /home/lililiang/cxl/gwas_scz/mixer-1.1/mixer/src/build/lib/libbgmg.so --seed ${SLURM_ARRAY_TASK_ID}

@cxlcoc cxlcoc changed the title from mixer.cli import log_header Segmentation fault (core dumped) Dec 12, 2024
@cxlcoc
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cxlcoc commented Dec 12, 2024

/var/lib/slurm/slurmd/job00848/slurm_script: line 16: 2769457 Segmentation fault (core dumped)

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