-
Notifications
You must be signed in to change notification settings - Fork 2
/
sequence.gb
173 lines (171 loc) · 9.83 KB
/
sequence.gb
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
LOCUS NM_204156 3193 bp mRNA linear VRT 02-OCT-2017
DEFINITION Gallus gallus histone deacetylase 1 (HDAC1), mRNA.
ACCESSION NM_204156 XM_001233396
VERSION NM_204156.1
KEYWORDS RefSeq.
SOURCE Gallus gallus (chicken)
ORGANISM Gallus gallus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
Phasianidae; Phasianinae; Gallus.
REFERENCE 1 (bases 1 to 3193)
AUTHORS Kurosawa K, Lin W and Ohta K.
TITLE Distinct roles of HDAC1 and HDAC2 in transcription and
recombination at the immunoglobulin loci in the chicken B cell line
DT40
JOURNAL J. Biochem. 148 (2), 201-207 (2010)
PUBMED 20511365
REMARK GeneRIF: transcription levels at IgL and IgH were decreased in
HDAC1(-/-) cells, while other genes actively transcribed in B cells
were slightly up-regulated compared to the levels in wild-type
cells.
REFERENCE 2 (bases 1 to 3193)
AUTHORS Slattery EL, Speck JD and Warchol ME.
TITLE Epigenetic influences on sensory regeneration: histone deacetylases
regulate supporting cell proliferation in the avian utricle
JOURNAL J. Assoc. Res. Otolaryngol. 10 (3), 341-353 (2009)
PUBMED 19340485
REMARK GeneRIF: HDAC1 and HDAC2 are positive regulators of regenerative
proliferation but they are not critical for avian hair cell
differentiation.
REFERENCE 3 (bases 1 to 3193)
AUTHORS Ahanda ML, Ruby T, Wittzell H, Bed'Hom B, Chausse AM, Morin V,
Oudin A, Chevalier C, Young JR and Zoorob R.
TITLE Non-coding RNAs revealed during identification of genes involved in
chicken immune responses
JOURNAL Immunogenetics 61 (1), 55-70 (2009)
PUBMED 19009289
REFERENCE 4 (bases 1 to 3193)
AUTHORS Verdin E, Dequiedt F and Kasler HG.
TITLE Class II histone deacetylases: versatile regulators
JOURNAL Trends Genet. 19 (5), 286-293 (2003)
PUBMED 12711221
REMARK Review article
REFERENCE 5 (bases 1 to 3193)
AUTHORS Takami Y, Kikuchi H and Nakayama T.
TITLE Chicken histone deacetylase-2 controls the amount of the IgM
H-chain at the steps of both transcription of its gene and
alternative processing of its pre-mRNA in the DT40 cell line
JOURNAL J. Biol. Chem. 274 (34), 23977-23990 (1999)
PUBMED 10446166
REFERENCE 6 (bases 1 to 3193)
AUTHORS Sun JM, Chen HY, Moniwa M, Samuel S and Davie JR.
TITLE Purification and characterization of chicken erythrocyte histone
deacetylase 1
JOURNAL Biochemistry 38 (18), 5939-5947 (1999)
PUBMED 10231548
COMMENT VALIDATED REFSEQ: This record has undergone validation or
preliminary review. The reference sequence was derived from
AJ453995.1, AF044169.1, AADN04000227.1 and CF251344.1.
On Oct 4, 2007 this sequence version replaced XM_001233396.1.
##Evidence-Data-START##
Transcript exon combination :: AF039751.1, AF043328.1 [ECO:0000332]
RNAseq introns :: mixed/partial sample support
SAMEA2201357, SAMEA2201358
[ECO:0000350]
##Evidence-Data-END##
COMPLETENESS: complete on the 3' end.
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-541 AJ453995.1 1-541
542-1253 AF044169.1 517-1228
1254-1254 AADN04000227.1 141362-141362 c
1255-1615 AF044169.1 1230-1590
1616-1961 CF251344.1 299-644
1962-3193 AADN04000227.1 138171-139402 c
FEATURES Location/Qualifiers
source 1..3193
/organism="Gallus gallus"
/mol_type="mRNA"
/db_xref="taxon:9031"
/chromosome="23"
/map="23"
/breed="Red Jungle Fowl"
gene 1..3193
/gene="HDAC1"
/note="histone deacetylase 1"
/db_xref="CGNC:2394"
/db_xref="GeneID:373961"
misc_feature 43..45
/gene="HDAC1"
/note="upstream in-frame stop codon"
CDS 73..1515
/gene="HDAC1"
/EC_number="3.5.1.98"
/note="HD1"
/codon_start=1
/product="histone deacetylase 1"
/protein_id="NP_989487.1"
/db_xref="CGNC:2394"
/db_xref="GeneID:373961"
/translation="MALTQGTKRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLN
YGLYRKMEIYRPHKANAEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPV
FDGLFEFCQLSAGGSVASAVKLNKQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAI
LELLKYHQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGK
GKYYAVNYPLRDGIDDESYEAIFKPVISKVMETFQPSAVVLQCGSDSLSGDRLGCFNL
TIKGHAKCVEFVKSFNLPMLMLGGGGYTIRNVARCWTYETAVALDTEIPNELPYNDYF
EYFGPDFKLHISPSNMTNQNTNEYLEKIKQRLFENLRMLPHAPGVQMQPIPEDAVQED
SGDEEEEDPEKRISIRNSDKRISCDEEFSDSEDEGEGGRKNVANFKKAKRVKTEEEKE
EEEKKDEKEEEKAKEEKAEPKGVKEETKST"
misc_feature 97..1035
/gene="HDAC1"
/experiment="experimental evidence, no additional details
recorded"
/note="propagated from UniProtKB/Swiss-Prot (P56517.1);
Region: Histone deacetylase"
ORIGIN
1 ggccccggcc ggtggggcgg gttgcgttgc gctgcgcggc ggtagggtct gcggccgtgg
61 ggaggcagga aaatggcgct gacgcagggg accaagcgga aagtctgcta ctactacgac
121 ggtgatgttg gaaactatta ctatggccag ggacacccca tgaagcccca caggatccgg
181 atgacccaca acctactgct gaactacggc ctttacagga agatggagat atatcgccct
241 cacaaggcga acgcggagga gatgaccaag taccacagtg atgactacat caaattcctg
301 agatccatcc gcccagacaa catgtctgag tacagcaagc agatgcaaag atttaacgtt
361 ggggaggact gccctgtgtt cgatgggctg tttgagttct gtcagctctc tgctggaggc
421 tccgttgcca gcgctgtgaa gctgaacaag caacagacag atattgctgt gaattgggca
481 ggaggccttc accacgctaa gaagtcggag gcttctggct tctgttatgt caacgatatt
541 gtcctggcta tcttggagct cttaaagtat caccagaggg tcctgtatat tgacattgat
601 attcaccatg gagatggtgt ggaggaagcc ttctatacca cagaccgtgt gatgaccgtg
661 tcctttcata agtatggaga gtacttccca ggaacagggg acctgcggga cattggtgca
721 ggcaaaggca aatactatgc tgtcaactat cccctccggg atgggattga tgatgagtcc
781 tacgaggcaa tattcaagcc ggtgatatct aaagtgatgg agacattcca gcctagtgca
841 gttgtcctgc agtgcgggtc ggattctctg tccggggaca ggctgggttg ttttaatctg
901 accatcaaag gtcatgccaa gtgtgtggag tttgtcaaaa gttttaattt gcctatgctg
961 atgctgggag gaggtggcta tacgatccgc aacgtggcca gatgctggac ctatgagact
1021 gctgtggctt tggacactga gatcccaaat gagctcccat ataatgacta ttttgagtac
1081 ttcggaccag actttaagct gcacatcagt ccctcaaaca tgaccaacca gaataccaat
1141 gagtatctcg agaagatcaa gcagcgtctc tttgagaatc tgcgcatgct gcctcatgcc
1201 cctggcgtcc agatgcagcc aattcctgag gatgctgttc aggaagacag tggagatgaa
1261 gaagaagaag atcctgagaa gcgcatttca atccgcaatt ctgataagag aatatcctgt
1321 gatgaagaat tctctgactc tgaagatgaa ggggaaggag ggcgcaaaaa tgttgccaac
1381 tttaagaagg ccaagcgtgt gaaaacagag gaggaaaagg aggaggagga gaagaaggat
1441 gagaaagaag aggaaaaagc aaaagaggag aaagccgaac ccaagggggt gaaggaagag
1501 acaaaatcca cctaagatgg ctgcagctgg acagtacctg tcagtgcata gttatcgtag
1561 gttagcttct ctggttgcct cccattccac aggatttata ttttatatat gtttctgtat
1621 atatttctat ataaatatat aaatgacttg agaactgtaa attattcctt gctgcactcc
1681 gctgggagca gacagggagg actctgcaga gtagagagac ccgcactgcc caggattggt
1741 gcctgggaag tttcactctt tgccttccac tgcctcctta gtgtgtcttt aaaaagaatc
1801 acttcctttc tttgctctcc tctgaagtaa ccacccttga aaatgaataa tttaagtaga
1861 agtagtgtct gcatttcagg ttaggtggaa agatggccat gaaacttttt tttttcttct
1921 tttcctttct cttttatttt attttatttt atcttttttt gtgggagata tgaattccca
1981 aattaagcct gtgagagact gagtgttcct ttggtcttca gtctgattcc accatggcaa
2041 gtaactgcaa gctggtgccg cttctcaggg tcaaatagtg cagttcttga acagagttgg
2101 ctaccttcct gcagcaaact ggtggaaaga gatgaagcag cttacaagca gatcagaaaa
2161 tcgctcgagt caatctgccc aagagccctg caggtataga tctggaaaat gccaagtgaa
2221 aatcaccctg atgtggtggt gaacgttttc caggatgtgg cagacctcat tagcggggca
2281 gcgctgtgca tcgcccatag gagaagggat ggaatcttta tgcacttgtt tcctatacct
2341 gtgcccctct ttgcagggag gaggtgagtt actgcccatc tggctgcctg cttcactctg
2401 cttctgccca cagcttcgtg tgctgtaatt gcttctcagt actgatctgt gtccttgctg
2461 aaaccgtagc agagcaggac agacagacgg agcccagctg atgcctctgc tccacgtgtc
2521 actcgctgag aaactctttc tgaagcagac atgttttcaa gtggaacctt tcctgtcttt
2581 gctctcaagg ccagtaaatg cggagagcct ttttatcagc agtctgagct gttatctgta
2641 cgagggaaca gcagatgggg ctctgtacgt ttttataact gctcctcttc ctcctcccac
2701 acgttatctc acacccaaag gtcttttgtg atcagagctg gcctttctca caccttgctt
2761 tgtacagctg agcgtgagat gagcgctccg tgggatgctt tgctgagctc cgactttgca
2821 gaagttctgc aggcagttct gactcgctgc tctccttcct ccgggggatt cctctgtcca
2881 taagaggatc tgtacctccc ccggggtgct gctggtggtt tcaactctaa taatgctgct
2941 aacttaacac aggttatttt taaaatgttt tattttttta aatgcttttt tccccccttt
3001 tccaccgtaa gttttgtagt ctcttggaac ctgagtggcg tctcactcct gctcttcagt
3061 gtttgtatgt gaagcgagag agatcagtgt atctttgtgt cttggggagg gggggggaaa
3121 tatattgtgg ttttttaaag atgcttttat tttaaatttt gagaatcttt gtaataaaac
3181 gtacatttct atg
//