The NCBI PGAP CWL and other code authored by NCBI is a "United States Government Work" under the terms of the United States Copyright Act. It was written as part of the authors' official duties as United States Government employees and thus cannot be copyrighted. This software is freely available to the public for use. The National Library of Medicine and the U.S. Government have not placed any restriction on its use or reproduction.
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The Docker image contains third-party tools distributed under the licensing terms of the respective license holders.
GeneMarkS is distributed as part of PGAP with limited rights of use and redistribution from the Georgia Tech Research Corporation. See the full text of the license.
The original TIGRFAMs database was a research project of the J. Craig Venter Institute (JCVI) . TIGRFAMs, short for The Institute for Genomic Research's database of protein families, is a collection of manually curated protein families focusing primarily on prokaryotic sequences. It consists of hidden Markov models (HMMs), multiple sequence alignments, Gene Ontology (GO) terminology, Enzyme Commission (EC) numbers, gene symbols, protein family names, descriptive text, cross-references to related models in TIGRFAMs and other databases, and pointers to the literature. The work has been described in the articles listed in the References section above and use of the TIGRFAMs database must grant proper attribution by citing those four articles.
As of April 2018, rights were transferred to the National Center for Biotechnology Information (NCBI), National Library of Medicine, NIH, for the data to be made available for distribution under a Creative Commons Attribution-ShareAlike 4.0 license. Please see (https://creativecommons.org/licenses/by-sa/4.0/) for a brief summary of the license and (https://creativecommons.org/licenses/by-sa/4.0/legalcode) to see the full text.