Empty BLAS flags in mamba-installed v2.18.1 environment under Docker #523
Comments
|
@michaelosthege, any luck debugging this on your own? I find it strange that the compilation error says that |
not yet. Earliest time window I have for debugging is tomorrow evening. |
|
Crossposting my debugging attempts from the thread in #528 With a bit more detailed logging (https://github.com/michaelosthege/pytensor/tree/mode-cmodule-logging) |
|
@michaelosthege, this still does not look like a blas flag issue. Your initial error when trying to run |
|
I checked the diff of my merge request again, but even after taking out a change that removed The potentially relevant parts of my diff amount to:
Essentially I switched from only installing pytensor-base, blas and libblas via conda-forge and PyMC from PyPI to installing everything from conda-forge. I will try to reverse these changes one by one. |
|
Why not use micromamba-docker as your base image? |
This particular one is a stack of Apache Airflow images, and I'm considering to switch to official Airflow images as the base (instead of ubuntu:22.04). Also, I just fixed my build! The trick was to NOT install channels:
- conda-forge
dependencies:
- numpy==1.24.4
- blas
- jax
- jaxlib >=0.3.7
- libblas
- mkl-service
- numba==0.57.1
- numpyro
- python-graphviz
- pytensor-base==2.18.1
- pip
- pip:
- mcbackend==0.5.1
- pymc==5.10.0
- pytensor-federated==1.0.1 |
|
Hmm, do you have any insight as to why the |
|
I don't know why, but here's a diff of the broken ( The difference in the diff --git a/env_broken.yml b/env_working.yml
index 8942157..c38d7fd 100644
--- a/env_broken.yml
+++ b/env_working.yml
@@ -24,7 +24,7 @@ apache-airflow-providers-sqlite 3.3.1 pypi_0 pypi
apache-airflow-providers-ssh 3.5.0 pypi_0 pypi
apispec 3.3.2 pypi_0 pypi
argcomplete 3.0.5 pypi_0 pypi
-arviz 0.16.1 pyhd8ed1ab_1 conda-forge
+arviz 0.16.1 pypi_0 pypi
asgiref 3.6.0 pypi_0 pypi
asn1crypto 1.5.1 pypi_0 pypi
asttokens 2.4.1 pyhd8ed1ab_0 conda-forge
@@ -38,8 +38,6 @@ bcrypt 4.0.1 pypi_0 pypi
beautifulsoup4 4.12.0 pyha770c72_0 conda-forge
betterproto 2.0.0b6 pypi_0 pypi
billiard 3.6.4.0 pypi_0 pypi
-binutils_impl_linux-64 2.40 hf600244_0 conda-forge
-binutils_linux-64 2.40 hbdbef99_2 conda-forge
black 23.11.0 pypi_0 pypi
blas 2.120 openblas conda-forge
blas-devel 3.9.0 20_linux64_openblas conda-forge
@@ -53,10 +51,8 @@ brotlipy 0.7.0 py310h5764c6d_1005 conda-forge
bzip2 1.0.8 h7f98852_4 conda-forge
c-ares 1.23.0 hd590300_0 conda-forge
ca-certificates 2022.12.7 ha878542_0 conda-forge
-cached-property 1.5.2 hd8ed1ab_1 conda-forge
-cached_property 1.5.2 pyha770c72_1 conda-forge
cachelib 0.9.0 pypi_0 pypi
-cachetools 5.3.2 pyhd8ed1ab_0 conda-forge
+cachetools 5.3.2 pypi_0 pypi
cairo 1.16.0 ha61ee94_1014 conda-forge
calibr8 7.1.0 pypi_0 pypi
calibr8-contrib 0.4.0 pypi_0 pypi
@@ -72,7 +68,7 @@ click-plugins 1.1.1 pypi_0 pypi
click-repl 0.2.0 pypi_0 pypi
clickclick 20.10.2 pypi_0 pypi
clickhouse-driver 0.2.6 py310h2372a71_1 conda-forge
-cloudpickle 3.0.0 pyhd8ed1ab_0 conda-forge
+cloudpickle 3.0.0 pypi_0 pypi
colorama 0.4.6 pyhd8ed1ab_0 conda-forge
colorlog 4.8.0 pypi_0 pypi
conda 23.1.0 py310hff52083_0 conda-forge
@@ -106,7 +102,7 @@ etuples 0.3.9 pyhd8ed1ab_0 conda-forge
exceptiongroup 1.1.1 pypi_0 pypi
executing 2.0.1 pyhd8ed1ab_0 conda-forge
expat 2.5.0 hcb278e6_1 conda-forge
-fastprogress 1.0.3 pyhd8ed1ab_0 conda-forge
+fastprogress 1.0.3 pypi_0 pypi
ffmpeg 5.1.2 gpl_h8dda1f0_106 conda-forge
fftw 3.3.10 nompi_hc118613_108 conda-forge
filelock 3.10.7 pyhd8ed1ab_0 conda-forge
@@ -133,9 +129,6 @@ freetype 2.12.1 h267a509_2 conda-forge
fribidi 1.0.10 h36c2ea0_0 conda-forge
frozenlist 1.3.3 py310h5764c6d_0 conda-forge
fsspec 2023.12.0 pypi_0 pypi
-gcc 12.3.0 h8d2909c_2 conda-forge
-gcc_impl_linux-64 12.3.0 he2b93b0_3 conda-forge
-gcc_linux-64 12.3.0 h76fc315_2 conda-forge
gdk-pixbuf 2.42.10 h05c8ddd_0 conda-forge
gettext 0.21.1 h27087fc_0 conda-forge
giflib 5.2.1 h0b41bf4_3 conda-forge
@@ -155,16 +148,12 @@ gstreamer-orc 0.4.34 hd590300_0 conda-forge
gtk2 2.24.33 h90689f9_2 conda-forge
gts 0.7.6 h977cf35_4 conda-forge
gunicorn 20.1.0 pypi_0 pypi
-gxx 12.3.0 h8d2909c_2 conda-forge
-gxx_impl_linux-64 12.3.0 he2b93b0_3 conda-forge
-gxx_linux-64 12.3.0 h8a814eb_2 conda-forge
h11 0.14.0 pypi_0 pypi
h2 4.1.0 pypi_0 pypi
-h5netcdf 1.3.0 pyhd8ed1ab_0 conda-forge
-h5py 3.8.0 nompi_py310h0311031_100 conda-forge
+h5netcdf 1.3.0 pypi_0 pypi
+h5py 3.10.0 pypi_0 pypi
hagelkorn 1.2.3 pypi_0 pypi
harfbuzz 6.0.0 h8e241bc_0 conda-forge
-hdf5 1.12.2 nompi_h4df4325_100 conda-forge
hpack 4.0.0 pypi_0 pypi
httpcore 0.16.3 pypi_0 pypi
httpx 0.23.3 pypi_0 pypi
@@ -192,7 +181,6 @@ joblib 1.3.2 pyhd8ed1ab_0 conda-forge
jpeg 9e h0b41bf4_3 conda-forge
jsonpath-ng 1.5.3 pypi_0 pypi
jsonschema 4.17.3 pypi_0 pypi
-kernel-headers_linux-64 2.6.32 he073ed8_16 conda-forge
keyutils 1.6.1 h166bdaf_0 conda-forge
kiwisolver 1.4.5 py310hd41b1e2_1 conda-forge
kombu 5.2.4 pypi_0 pypi
@@ -224,14 +212,13 @@ libevent 2.1.10 h28343ad_4 conda-forge
libexpat 2.5.0 hcb278e6_1 conda-forge
libffi 3.4.2 h7f98852_5 conda-forge
libflac 1.4.3 h59595ed_0 conda-forge
-libgcc-devel_linux-64 12.3.0 h8bca6fd_103 conda-forge
-libgcc-ng 13.2.0 h807b86a_3 conda-forge
+libgcc-ng 12.2.0 h65d4601_19 conda-forge
libgcrypt 1.10.3 hd590300_0 conda-forge
libgd 2.3.3 h5aea950_4 conda-forge
-libgfortran-ng 13.2.0 h69a702a_3 conda-forge
-libgfortran5 13.2.0 ha4646dd_3 conda-forge
+libgfortran-ng 13.2.0 h69a702a_0 conda-forge
+libgfortran5 13.2.0 ha4646dd_0 conda-forge
libglib 2.78.1 h783c2da_1 conda-forge
-libgomp 13.2.0 h807b86a_3 conda-forge
+libgomp 12.2.0 h65d4601_19 conda-forge
libgpg-error 1.47 h71f35ed_0 conda-forge
libgrpc 1.58.2 he06187c_0 conda-forge
libhwloc 2.9.1 hd6dc26d_0 conda-forge
@@ -256,13 +243,11 @@ libpq 15.1 h67c24c5_1 conda-forge
libprotobuf 4.24.3 hf27288f_1 conda-forge
libre2-11 2023.06.02 h7a70373_0 conda-forge
librsvg 2.54.4 h7abd40a_0 conda-forge
-libsanitizer 12.3.0 h0f45ef3_3 conda-forge
libsndfile 1.2.2 hc60ed4a_1 conda-forge
libsolv 0.7.23 h3eb15da_0 conda-forge
libsqlite 3.40.0 h753d276_0 conda-forge
libssh2 1.10.0 hf14f497_3 conda-forge
-libstdcxx-devel_linux-64 12.3.0 h8bca6fd_103 conda-forge
-libstdcxx-ng 13.2.0 h7e041cc_3 conda-forge
+libstdcxx-ng 12.2.0 h46fd767_19 conda-forge
libsystemd0 253 h8c4010b_1 conda-forge
libtasn1 4.19.0 h166bdaf_0 conda-forge
libtiff 4.5.0 h6adf6a1_2 conda-forge
@@ -382,8 +367,7 @@ pycosat 0.6.4 py310h5764c6d_1 conda-forge
pycparser 2.21 pyhd8ed1ab_0 conda-forge
pygments 2.14.0 pypi_0 pypi
pyjwt 2.6.0 pypi_0 pypi
-pymc 5.10.0 hd8ed1ab_0 conda-forge
-pymc-base 5.10.0 pyhd8ed1ab_0 conda-forge
+pymc 5.10.0 pypi_0 pypi
pynacl 1.5.0 pypi_0 pypi
pyopenssl 23.1.1 pyhd8ed1ab_0 conda-forge
pyparsing 3.1.1 pyhd8ed1ab_0 conda-forge
@@ -392,7 +376,6 @@ pyqt5-sip 12.11.0 py310heca2aa9_3 conda-forge
pyrff 2.0.2 pypi_0 pypi
pyrsistent 0.19.3 pypi_0 pypi
pysocks 1.7.1 pyha2e5f31_6 conda-forge
-pytensor 2.18.1 py310hc6cd4ac_0 conda-forge
pytensor-base 2.18.1 py310hcc13569_0 conda-forge
pytensor-federated 1.0.1 pypi_0 pypi
pytest 7.4.3 pypi_0 pypi
@@ -449,7 +432,6 @@ stack_data 0.6.2 pyhd8ed1ab_0 conda-forge
statsmodels 0.14.0 py310h1f7b6fc_2 conda-forge
stumpy 1.12.0 pypi_0 pypi
svt-av1 1.4.1 hcb278e6_0 conda-forge
-sysroot_linux-64 2.12 he073ed8_16 conda-forge
tabulate 0.9.0 pypi_0 pypi
tbb 2021.9.0 hf52228f_0 conda-forge
tblib 3.0.0 pypi_0 pypi
@@ -484,8 +466,8 @@ wrapt 1.15.0 py310h1fa729e_0 conda-forge
wtforms 3.0.1 pypi_0 pypi
x264 1!164.3095 h166bdaf_2 conda-forge
x265 3.5 h924138e_3 conda-forge
-xarray 2023.11.0 pyhd8ed1ab_0 conda-forge
-xarray-einstats 0.6.0 pyhd8ed1ab_0 conda-forge
+xarray 2023.11.0 pypi_0 pypi
+xarray-einstats 0.6.0 pypi_0 pypi
xcb-util 0.4.0 h516909a_0 conda-forge
xcb-util-image 0.4.0 h166bdaf_0 conda-forge
xcb-util-keysyms 0.4.0 h516909a_0 conda-forge |
|
Wow that's really weird. Any chance you could provide |
broken.ymlname: base
channels:
- conda-forge
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_kmp_llvm
- aiobotocore=1.1.2=py_0
- aiohttp=3.8.4=py310h1fa729e_0
- aioitertools=0.11.0=pyhd8ed1ab_0
- aiosignal=1.3.1=pyhd8ed1ab_0
- alsa-lib=1.2.8=h166bdaf_0
- aom=3.5.0=h27087fc_0
- arviz=0.16.1=pyhd8ed1ab_1
- asttokens=2.4.1=pyhd8ed1ab_0
- async-timeout=4.0.2=pyhd8ed1ab_0
- atk-1.0=2.38.0=hd4edc92_1
- attr=2.5.1=h166bdaf_1
- attrs=22.2.0=pyh71513ae_0
- beautifulsoup4=4.12.0=pyha770c72_0
- binutils_impl_linux-64=2.40=hf600244_0
- binutils_linux-64=2.40=hbdbef99_2
- blas=2.120=openblas
- blas-devel=3.9.0=20_linux64_openblas
- brotli=1.1.0=hd590300_1
- brotli-bin=1.1.0=hd590300_1
- brotlipy=0.7.0=py310h5764c6d_1005
- bzip2=1.0.8=h7f98852_4
- c-ares=1.23.0=hd590300_0
- ca-certificates=2022.12.7=ha878542_0
- cached-property=1.5.2=hd8ed1ab_1
- cached_property=1.5.2=pyha770c72_1
- cachetools=5.3.2=pyhd8ed1ab_0
- cairo=1.16.0=ha61ee94_1014
- cffi=1.15.1=py310h255011f_3
- chardet=5.1.0=py310hff52083_0
- clickhouse-driver=0.2.6=py310h2372a71_1
- cloudpickle=3.0.0=pyhd8ed1ab_0
- colorama=0.4.6=pyhd8ed1ab_0
- conda=23.1.0=py310hff52083_0
- conda-build=3.24.0=py310hff52083_0
- conda-package-handling=2.0.2=pyh38be061_0
- conda-package-streaming=0.7.0=pyhd8ed1ab_1
- cons=0.4.6=pyhd8ed1ab_0
- contourpy=1.2.0=py310hd41b1e2_0
- cryptography=40.0.1=py310h34c0648_0
- cycler=0.12.1=pyhd8ed1ab_0
- cyrus-sasl=2.1.27=h7604b24_5
- dbus=1.13.6=h5008d03_3
- decorator=5.1.1=pyhd8ed1ab_0
- docutils=0.15.2=py310hff52083_6
- et_xmlfile=1.1.0=pyhd8ed1ab_0
- etuples=0.3.9=pyhd8ed1ab_0
- executing=2.0.1=pyhd8ed1ab_0
- expat=2.5.0=hcb278e6_1
- fastprogress=1.0.3=pyhd8ed1ab_0
- ffmpeg=5.1.2=gpl_h8dda1f0_106
- fftw=3.3.10=nompi_hc118613_108
- filelock=3.10.7=pyhd8ed1ab_0
- fmt=9.1.0=h924138e_0
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- font-ttf-inconsolata=3.000=h77eed37_0
- font-ttf-source-code-pro=2.038=h77eed37_0
- font-ttf-ubuntu=0.83=h77eed37_1
- fontconfig=2.14.2=h14ed4e7_0
- fonts-conda-ecosystem=1=0
- fonts-conda-forge=1=0
- fonttools=4.46.0=py310h2372a71_0
- freetype=2.12.1=h267a509_2
- fribidi=1.0.10=h36c2ea0_0
- frozenlist=1.3.3=py310h5764c6d_0
- gcc=12.3.0=h8d2909c_2
- gcc_impl_linux-64=12.3.0=he2b93b0_3
- gcc_linux-64=12.3.0=h76fc315_2
- gdk-pixbuf=2.42.10=h05c8ddd_0
- gettext=0.21.1=h27087fc_0
- giflib=5.2.1=h0b41bf4_3
- glib=2.78.2=hfc55251_0
- glib-tools=2.78.2=hfc55251_0
- glob2=0.7=py_0
- gmp=6.3.0=h59595ed_0
- gnutls=3.7.9=hb077bed_0
- graphite2=1.3.13=h58526e2_1001
- graphviz=7.1.0=h2e5815a_0
- gst-plugins-base=1.21.3=h4243ec0_1
- gstreamer=1.21.3=h25f0c4b_1
- gstreamer-orc=0.4.34=hd590300_0
- gtk2=2.24.33=h90689f9_2
- gts=0.7.6=h977cf35_4
- gxx=12.3.0=h8d2909c_2
- gxx_impl_linux-64=12.3.0=he2b93b0_3
- gxx_linux-64=12.3.0=h8a814eb_2
- h5netcdf=1.3.0=pyhd8ed1ab_0
- h5py=3.8.0=nompi_py310h0311031_100
- harfbuzz=6.0.0=h8e241bc_0
- hdf5=1.12.2=nompi_h4df4325_100
- icu=70.1=h27087fc_0
- imageio=2.31.5=pyh8c1a49c_0
- imageio-ffmpeg=0.4.9=pyhd8ed1ab_0
- importlib-metadata=7.0.0=pyha770c72_0
- importlib_metadata=7.0.0=hd8ed1ab_0
- ipython=8.18.1=pyh707e725_3
- iso3166=2.1.1=pyhd8ed1ab_0
- jack=1.9.22=h11f4161_0
- jax=0.4.21=pyhd8ed1ab_0
- jaxlib=0.4.19=cpu_py310h9ed8a0c_0
- jedi=0.19.1=pyhd8ed1ab_0
- jinja2=3.1.2=pyhd8ed1ab_1
- jmespath=0.10.0=pyh9f0ad1d_0
- joblib=1.3.2=pyhd8ed1ab_0
- jpeg=9e=h0b41bf4_3
- kernel-headers_linux-64=2.6.32=he073ed8_16
- keyutils=1.6.1=h166bdaf_0
- kiwisolver=1.4.5=py310hd41b1e2_1
- krb5=1.19.3=h08a2579_0
- lame=3.100=h166bdaf_1003
- lcms2=2.15=hfd0df8a_0
- ld_impl_linux-64=2.40=h41732ed_0
- lerc=4.0.0=h27087fc_0
- libabseil=20230802.1=cxx17_h59595ed_0
- libarchive=3.6.2=h3d51595_0
- libblas=3.9.0=20_linux64_openblas
- libbrotlicommon=1.1.0=hd590300_1
- libbrotlidec=1.1.0=hd590300_1
- libbrotlienc=1.1.0=hd590300_1
- libcap=2.67=he9d0100_0
- libcblas=3.9.0=20_linux64_openblas
- libclang=15.0.7=default_hb11cfb5_4
- libclang13=15.0.7=default_ha2b6cf4_4
- libcups=2.3.3=h3e49a29_2
- libcurl=7.86.0=h2283fc2_1
- libdb=6.2.32=h9c3ff4c_0
- libdeflate=1.17=h0b41bf4_0
- libdrm=2.4.114=h166bdaf_0
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=h516909a_1
- libevent=2.1.10=h28343ad_4
- libexpat=2.5.0=hcb278e6_1
- libffi=3.4.2=h7f98852_5
- libflac=1.4.3=h59595ed_0
- libgcc-devel_linux-64=12.3.0=h8bca6fd_103
- libgcc-ng=13.2.0=h807b86a_3
- libgcrypt=1.10.3=hd590300_0
- libgd=2.3.3=h5aea950_4
- libgfortran-ng=13.2.0=h69a702a_3
- libgfortran5=13.2.0=ha4646dd_3
- libglib=2.78.2=h783c2da_0
- libgomp=13.2.0=h807b86a_3
- libgpg-error=1.47=h71f35ed_0
- libgrpc=1.58.2=he06187c_0
- libhwloc=2.9.1=hd6dc26d_0
- libiconv=1.17=h166bdaf_0
- libidn2=2.3.4=h166bdaf_0
- liblapack=3.9.0=20_linux64_openblas
- liblapacke=3.9.0=20_linux64_openblas
- liblief=0.12.3=h27087fc_0
- libllvm14=14.0.6=hcd5def8_4
- libllvm15=15.0.7=hadd5161_1
- libmamba=1.1.0=hde2b089_3
- libmambapy=1.1.0=py310h1428755_3
- libnghttp2=1.52.0=h61bc06f_0
- libnsl=2.0.0=h7f98852_0
- libntlm=1.4=h7f98852_1002
- libogg=1.3.4=h7f98852_1
- libopenblas=0.3.25=pthreads_h413a1c8_0
- libopus=1.3.1=h7f98852_1
- libpciaccess=0.17=h166bdaf_0
- libpng=1.6.39=h753d276_0
- libpq=15.1=h67c24c5_1
- libprotobuf=4.24.3=hf27288f_1
- libre2-11=2023.06.02=h7a70373_0
- librsvg=2.54.4=h7abd40a_0
- libsanitizer=12.3.0=h0f45ef3_3
- libsndfile=1.2.2=hc60ed4a_1
- libsolv=0.7.23=h3eb15da_0
- libsqlite=3.40.0=h753d276_0
- libssh2=1.10.0=hf14f497_3
- libstdcxx-devel_linux-64=12.3.0=h8bca6fd_103
- libstdcxx-ng=13.2.0=h7e041cc_3
- libsystemd0=253=h8c4010b_1
- libtasn1=4.19.0=h166bdaf_0
- libtiff=4.5.0=h6adf6a1_2
- libtool=2.4.7=h27087fc_0
- libudev1=253=h0b41bf4_1
- libunistring=0.9.10=h7f98852_0
- libuuid=2.32.1=h7f98852_1000
- libva=2.18.0=h0b41bf4_0
- libvorbis=1.3.7=h9c3ff4c_0
- libvpx=1.11.0=h9c3ff4c_3
- libwebp=1.2.4=h1daa5a0_1
- libwebp-base=1.2.4=h166bdaf_0
- libxcb=1.13=h7f98852_1004
- libxkbcommon=1.5.0=h79f4944_1
- libxml2=2.10.3=hca2bb57_4
- libzlib=1.2.13=h166bdaf_4
- llvm-openmp=17.0.6=h4dfa4b3_0
- llvmlite=0.40.1=py310h1b8f574_0
- logical-unification=0.4.6=pyhd8ed1ab_0
- lz4-c=1.9.4=hcb278e6_0
- lzo=2.10=h516909a_1000
- mamba=1.1.0=py310h51d5547_3
- markupsafe=2.1.2=py310h1fa729e_0
- matplotlib=3.8.2=py310hff52083_0
- matplotlib-base=3.8.2=py310h62c0568_0
- matplotlib-inline=0.1.6=pyhd8ed1ab_0
- minikanren=1.0.3=pyhd8ed1ab_0
- mkl=2022.2.1=h84fe81f_16997
- mkl-service=2.4.0=py310h9263142_0
- ml_dtypes=0.3.1=py310hcc13569_2
- mpg123=1.32.3=h59595ed_0
- multidict=6.0.4=py310h1fa729e_0
- multipledispatch=0.6.0=py_0
- munkres=1.1.4=pyh9f0ad1d_0
- mysql-common=8.0.33=hf1915f5_6
- mysql-libs=8.0.33=hca2cd23_6
- ncurses=6.3=h27087fc_1
- ndg-httpsclient=0.5.1=py_1
- nettle=3.9.1=h7ab15ed_0
- nspr=4.35=h27087fc_0
- nss=3.89=he45b914_0
- numba=0.57.1=py310h0f6aa51_0
- numpy=1.24.4=py310ha4c1d20_0
- numpyro=0.13.2=pyhd8ed1ab_1
- openblas=0.3.25=pthreads_h7a3da1a_0
- openh264=2.3.1=hcb278e6_2
- openjpeg=2.5.0=hfec8fc6_2
- openldap=2.4.59=hc311a53_0
- openpyxl=3.1.2=py310h2372a71_1
- openssl=3.1.4=hd590300_0
- opt-einsum=3.3.0=hd8ed1ab_2
- opt_einsum=3.3.0=pyhc1e730c_2
- p11-kit=0.24.1=hc5aa10d_0
- packaging=23.0=pyhd8ed1ab_0
- pandas=1.5.3=py310h9b08913_1
- pango=1.50.14=hd33c08f_0
- parso=0.8.3=pyhd8ed1ab_0
- patch=2.7.6=h7f98852_1002
- patchelf=0.17.2=h58526e2_0
- patsy=0.5.4=pyhd8ed1ab_0
- pcre2=10.42=hcad00b1_0
- pexpect=4.8.0=pyh1a96a4e_2
- pickleshare=0.7.5=py_1003
- pillow=9.4.0=py310h023d228_1
- pip=23.3.1=pyhd8ed1ab_0
- pixman=0.42.2=h59595ed_0
- pkginfo=1.9.6=pyhd8ed1ab_0
- pluggy=1.0.0=pyhd8ed1ab_5
- psutil=5.9.4=py310h5764c6d_0
- pthread-stubs=0.4=h36c2ea0_1001
- ptyprocess=0.7.0=pyhd3deb0d_0
- pulseaudio=16.1=hcb278e6_3
- pulseaudio-client=16.1=h5195f5e_3
- pulseaudio-daemon=16.1=ha8d29e2_3
- pure_eval=0.2.2=pyhd8ed1ab_0
- py-lief=0.12.3=py310hd8f1fbe_0
- pyasn1=0.4.8=py_0
- pyasn1-modules=0.2.7=py_0
- pybind11-abi=4=hd8ed1ab_3
- pycosat=0.6.4=py310h5764c6d_1
- pycparser=2.21=pyhd8ed1ab_0
- pymc=5.10.0=hd8ed1ab_0
- pymc-base=5.10.0=pyhd8ed1ab_0
- pyopenssl=23.1.1=pyhd8ed1ab_0
- pyparsing=3.1.1=pyhd8ed1ab_0
- pyqt=5.15.7=py310hab646b1_3
- pyqt5-sip=12.11.0=py310heca2aa9_3
- pysocks=1.7.1=pyha2e5f31_6
- pytensor=2.18.1=py310hc6cd4ac_0
- pytensor-base=2.18.1=py310hcc13569_0
- python=3.10.10=he550d4f_0_cpython
- python-dateutil=2.8.2=pyhd8ed1ab_0
- python-graphviz=0.20.1=pyh22cad53_0
- python-ldap=3.4.0=py310h1fa729e_3
- python-libarchive-c=4.0=py310hff52083_2
- python_abi=3.10=3_cp310
- pyyaml=6.0=py310h5764c6d_5
- qt-main=5.15.6=hafeba50_4
- re2=2023.06.02=h2873b5e_0
- readline=8.2=h8228510_1
- reproc=14.2.4=h0b41bf4_0
- reproc-cpp=14.2.4=hcb278e6_0
- ripgrep=13.0.0=h2f28480_2
- ruamel.yaml=0.17.21=py310h1fa729e_3
- ruamel.yaml.clib=0.2.7=py310h1fa729e_1
- s3fs=2021.7.0=pyhd8ed1ab_0
- scikit-learn=1.3.2=py310h1fdf081_1
- scipy=1.11.4=py310hb13e2d6_0
- setuptools=65.6.3=pyhd8ed1ab_0
- sip=6.7.12=py310hc6cd4ac_0
- six=1.16.0=pyh6c4a22f_0
- soupsieve=2.3.2.post1=pyhd8ed1ab_0
- stack_data=0.6.2=pyhd8ed1ab_0
- statsmodels=0.14.0=py310h1f7b6fc_2
- svt-av1=1.4.1=hcb278e6_0
- sysroot_linux-64=2.12=he073ed8_16
- tbb=2021.9.0=hf52228f_0
- threadpoolctl=3.2.0=pyha21a80b_0
- tk=8.6.13=noxft_h4845f30_101
- toml=0.10.2=pyhd8ed1ab_0
- tomli=2.0.1=pyhd8ed1ab_0
- toolz=0.12.0=pyhd8ed1ab_0
- tqdm=4.65.0=pyhd8ed1ab_1
- traitlets=5.14.0=pyhd8ed1ab_0
- tzdata=2023b=h71feb2d_0
- tzlocal=5.2=py310hff52083_0
- unicodedata2=15.1.0=py310h2372a71_0
- watermark=2.4.3=pyhd8ed1ab_0
- wheel=0.40.0=pyhd8ed1ab_0
- wrapt=1.15.0=py310h1fa729e_0
- x264=1!164.3095=h166bdaf_2
- x265=3.5=h924138e_3
- xarray=2023.11.0=pyhd8ed1ab_0
- xarray-einstats=0.6.0=pyhd8ed1ab_0
- xcb-util=0.4.0=h516909a_0
- xcb-util-image=0.4.0=h166bdaf_0
- xcb-util-keysyms=0.4.0=h516909a_0
- xcb-util-renderutil=0.3.9=h166bdaf_0
- xcb-util-wm=0.4.1=h516909a_0
- xkeyboard-config=2.38=h0b41bf4_0
- xorg-fixesproto=5.0=h7f98852_1002
- xorg-kbproto=1.0.7=h7f98852_1002
- xorg-libice=1.0.10=h7f98852_0
- xorg-libsm=1.2.3=hd9c2040_1000
- xorg-libx11=1.8.4=h0b41bf4_0
- xorg-libxau=1.0.11=hd590300_0
- xorg-libxdmcp=1.1.3=h7f98852_0
- xorg-libxext=1.3.4=h0b41bf4_2
- xorg-libxfixes=5.0.3=h7f98852_1004
- xorg-libxrender=0.9.10=h7f98852_1003
- xorg-renderproto=0.11.1=h7f98852_1002
- xorg-xextproto=7.3.0=h0b41bf4_1003
- xorg-xproto=7.0.31=h7f98852_1007
- xz=5.2.6=h166bdaf_0
- yaml=0.2.5=h7f98852_2
- yaml-cpp=0.7.0=h27087fc_2
- yarl=1.8.2=py310h5764c6d_0
- zipp=3.17.0=pyhd8ed1ab_0
- zlib=1.2.13=h166bdaf_4
- zstandard=0.19.0=py310hdeb6495_1
- zstd=1.5.5=hfc55251_0
- pip:
- alembic==1.10.2
- amqp==5.1.1
- anyio==3.6.2
- apache-airflow==2.5.2
- apache-airflow-flowitems==1.0.2
- apache-airflow-providers-amazon==7.3.0
- apache-airflow-providers-celery==3.1.0
- apache-airflow-providers-common-sql==1.3.4
- apache-airflow-providers-docker==3.5.1
- apache-airflow-providers-ftp==3.3.1
- apache-airflow-providers-http==4.2.0
- apache-airflow-providers-imap==3.1.1
- apache-airflow-providers-mysql==4.0.2
- apache-airflow-providers-slack==7.2.0
- apache-airflow-providers-sqlite==3.3.1
- apache-airflow-providers-ssh==3.5.0
- apispec==3.3.2
- argcomplete==3.0.5
- asgiref==3.6.0
- asn1crypto==1.5.1
- avro-python3==1.10.2
- babel==2.12.1
- bcrypt==4.0.1
- betterproto==2.0.0b6
- billiard==3.6.4.0
- black==23.11.0
- bletl==1.4.1
- blinker==1.5
- boto3==1.26.104
- botocore==1.29.104
- cachelib==0.9.0
- calibr8==7.1.0
- cattrs==22.2.0
- celery==5.2.7
- certifi==2023.7.22
- charset-normalizer==2.0.12
- click==8.1.3
- click-didyoumean==0.3.0
- click-plugins==1.1.1
- click-repl==0.2.0
- clickclick==20.10.2
- colorlog==4.8.0
- configupdater==3.1.1
- connexion==2.14.2
- cron-descriptor==1.2.35
- croniter==1.3.8
- csaps==1.1.0
- dask==2023.12.0
- deprecated==1.2.13
- dill==0.3.6
- distributed==2023.12.0
- dnspython==2.3.0
- docker==6.0.1
- email-validator==1.3.1
- exceptiongroup==1.1.1
- flask==2.2.3
- flask-appbuilder==4.1.4
- flask-babel==2.0.0
- flask-caching==2.0.2
- flask-jwt-extended==4.4.4
- flask-login==0.6.2
- flask-session==0.4.0
- flask-sqlalchemy==2.5.1
- flask-wtf==1.1.1
- flower==1.2.0
- fsspec==2023.12.1
- gittrail==0.1.1
- greenlet==2.0.2
- grpclib==0.4.6
- gunicorn==20.1.0
- h11==0.14.0
- h2==4.1.0
- hagelkorn==1.2.3
- hpack==4.0.0
- httpcore==0.16.3
- httpx==0.23.3
- humanize==4.6.0
- hyperframe==6.0.1
- idna==3.3
- inflection==0.5.1
- iniconfig==2.0.0
- isort==5.12.0
- itsdangerous==2.1.2
- jsonpath-ng==1.5.3
- jsonschema==4.17.3
- kombu==5.2.4
- lazy-object-proxy==1.9.0
- ldap3==2.9.1
- linkify-it-py==2.0.0
- locket==1.0.0
- lockfile==0.12.2
- lxml==4.9.3
- mako==1.2.4
- markdown==3.4.3
- markdown-it-py==2.2.0
- marshmallow==3.19.0
- marshmallow-enum==1.5.1
- marshmallow-oneofschema==3.0.1
- marshmallow-sqlalchemy==0.26.1
- mcbackend==0.5.1
- mdit-py-plugins==0.3.5
- mdurl==0.1.2
- msgpack==1.0.7
- murefi==5.3.0
- mypy-boto3-appflow==1.26.78
- mypy-boto3-rds==1.26.102
- mypy-boto3-redshift-data==1.26.88
- mypy-extensions==1.0.0
- mysql-connector-python==8.0.32
- mysqlclient==2.1.1
- nest-asyncio==1.5.8
- paramiko==3.1.0
- partd==1.4.1
- pathspec==0.9.0
- peak-performance==0.6.4
- pendulum==2.1.2
- platformdirs==4.1.0
- ply==3.11
- prison==0.2.1
- prometheus-client==0.16.0
- prompt-toolkit==3.0.38
- protobuf==3.20.3
- psycopg2-binary==2.9.9
- pygments==2.14.0
- pyjwt==2.6.0
- pynacl==1.5.0
- pyrff==2.0.2
- pyrsistent==0.19.3
- pytensor-federated==1.0.1
- pytest==7.4.3
- python-daemon==3.0.1
- python-dotenv==1.0.0
- python-nvd3==0.15.0
- python-slugify==8.0.1
- pytz==2022.1
- pytzdata==2020.1
- redis==3.5.3
- redshift-connector==2.0.910
- requests==2.31.0
- requests-toolbelt==0.10.1
- rfc3339-validator==0.1.4
- rfc3986==1.5.0
- rich==13.3.3
- robotools==1.8.0
- s3transfer==0.6.0
- scramp==1.4.4
- setproctitle==1.3.2
- slack-sdk==3.20.2
- sniffio==1.3.0
- sortedcontainers==2.4.0
- sqlalchemy==1.4.46
- sqlalchemy-jsonfield==1.0.1.post0
- sqlalchemy-redshift==0.8.13
- sqlalchemy-utils==0.40.0
- sqlparse==0.4.3
- sshtunnel==0.4.0
- stumpy==1.12.0
- tabulate==0.9.0
- tblib==3.0.0
- tenacity==8.2.2
- termcolor==2.2.0
- text-unidecode==1.3
- tornado==6.2
- tsfresh==0.20.1
- typing==3.7.4.3
- typing-extensions==4.1.0
- uc-micro-py==1.0.1
- unicodecsv==0.14.1
- urllib3==1.26.8
- vine==5.0.0
- watchtower==2.0.1
- wcwidth==0.2.6
- websocket-client==1.5.1
- werkzeug==2.2.3
- wtforms==3.0.1
- zict==3.0.0working.ymlname: base
channels:
- conda-forge
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_kmp_llvm
- aiobotocore=1.1.2=py_0
- aiohttp=3.8.4=py310h1fa729e_0
- aioitertools=0.11.0=pyhd8ed1ab_0
- aiosignal=1.3.1=pyhd8ed1ab_0
- alsa-lib=1.2.8=h166bdaf_0
- aom=3.5.0=h27087fc_0
- asttokens=2.4.1=pyhd8ed1ab_0
- async-timeout=4.0.2=pyhd8ed1ab_0
- atk-1.0=2.38.0=hd4edc92_1
- attr=2.5.1=h166bdaf_1
- attrs=22.2.0=pyh71513ae_0
- beautifulsoup4=4.12.0=pyha770c72_0
- blas=2.120=openblas
- blas-devel=3.9.0=20_linux64_openblas
- brotli=1.1.0=hd590300_1
- brotli-bin=1.1.0=hd590300_1
- brotlipy=0.7.0=py310h5764c6d_1005
- bzip2=1.0.8=h7f98852_4
- c-ares=1.23.0=hd590300_0
- ca-certificates=2022.12.7=ha878542_0
- cairo=1.16.0=ha61ee94_1014
- cffi=1.15.1=py310h255011f_3
- chardet=5.1.0=py310hff52083_0
- clickhouse-driver=0.2.6=py310h2372a71_1
- colorama=0.4.6=pyhd8ed1ab_0
- conda=23.1.0=py310hff52083_0
- conda-build=3.24.0=py310hff52083_0
- conda-package-handling=2.0.2=pyh38be061_0
- conda-package-streaming=0.7.0=pyhd8ed1ab_1
- cons=0.4.6=pyhd8ed1ab_0
- contourpy=1.2.0=py310hd41b1e2_0
- cryptography=40.0.1=py310h34c0648_0
- cycler=0.12.1=pyhd8ed1ab_0
- cyrus-sasl=2.1.27=h7604b24_5
- dbus=1.13.6=h5008d03_3
- decorator=5.1.1=pyhd8ed1ab_0
- docutils=0.15.2=py310hff52083_6
- et_xmlfile=1.1.0=pyhd8ed1ab_0
- etuples=0.3.9=pyhd8ed1ab_0
- executing=2.0.1=pyhd8ed1ab_0
- expat=2.5.0=hcb278e6_1
- ffmpeg=5.1.2=gpl_h8dda1f0_106
- fftw=3.3.10=nompi_hc118613_108
- filelock=3.10.7=pyhd8ed1ab_0
- fmt=9.1.0=h924138e_0
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- font-ttf-inconsolata=3.000=h77eed37_0
- font-ttf-source-code-pro=2.038=h77eed37_0
- font-ttf-ubuntu=0.83=h77eed37_1
- fontconfig=2.14.2=h14ed4e7_0
- fonts-conda-ecosystem=1=0
- fonts-conda-forge=1=0
- fonttools=4.46.0=py310h2372a71_0
- freetype=2.12.1=h267a509_2
- fribidi=1.0.10=h36c2ea0_0
- frozenlist=1.3.3=py310h5764c6d_0
- gdk-pixbuf=2.42.10=h05c8ddd_0
- gettext=0.21.1=h27087fc_0
- giflib=5.2.1=h0b41bf4_3
- glib=2.78.2=hfc55251_0
- glib-tools=2.78.2=hfc55251_0
- glob2=0.7=py_0
- gmp=6.3.0=h59595ed_0
- gnutls=3.7.9=hb077bed_0
- graphite2=1.3.13=h58526e2_1001
- graphviz=7.1.0=h2e5815a_0
- gst-plugins-base=1.21.3=h4243ec0_1
- gstreamer=1.21.3=h25f0c4b_1
- gstreamer-orc=0.4.34=hd590300_0
- gtk2=2.24.33=h90689f9_2
- gts=0.7.6=h977cf35_4
- harfbuzz=6.0.0=h8e241bc_0
- icu=70.1=h27087fc_0
- imageio=2.31.5=pyh8c1a49c_0
- imageio-ffmpeg=0.4.9=pyhd8ed1ab_0
- importlib-metadata=7.0.0=pyha770c72_0
- importlib_metadata=7.0.0=hd8ed1ab_0
- ipython=8.18.1=pyh707e725_3
- iso3166=2.1.1=pyhd8ed1ab_0
- jack=1.9.22=h11f4161_0
- jax=0.4.21=pyhd8ed1ab_0
- jaxlib=0.4.19=cpu_py310h9ed8a0c_0
- jedi=0.19.1=pyhd8ed1ab_0
- jinja2=3.1.2=pyhd8ed1ab_1
- jmespath=0.10.0=pyh9f0ad1d_0
- joblib=1.3.2=pyhd8ed1ab_0
- jpeg=9e=h0b41bf4_3
- keyutils=1.6.1=h166bdaf_0
- kiwisolver=1.4.5=py310hd41b1e2_1
- krb5=1.19.3=h08a2579_0
- lame=3.100=h166bdaf_1003
- lcms2=2.15=hfd0df8a_0
- ld_impl_linux-64=2.40=h41732ed_0
- lerc=4.0.0=h27087fc_0
- libabseil=20230802.1=cxx17_h59595ed_0
- libarchive=3.6.2=h3d51595_0
- libblas=3.9.0=20_linux64_openblas
- libbrotlicommon=1.1.0=hd590300_1
- libbrotlidec=1.1.0=hd590300_1
- libbrotlienc=1.1.0=hd590300_1
- libcap=2.67=he9d0100_0
- libcblas=3.9.0=20_linux64_openblas
- libclang=15.0.7=default_hb11cfb5_4
- libclang13=15.0.7=default_ha2b6cf4_4
- libcups=2.3.3=h3e49a29_2
- libcurl=7.86.0=h2283fc2_1
- libdb=6.2.32=h9c3ff4c_0
- libdeflate=1.17=h0b41bf4_0
- libdrm=2.4.114=h166bdaf_0
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=h516909a_1
- libevent=2.1.10=h28343ad_4
- libexpat=2.5.0=hcb278e6_1
- libffi=3.4.2=h7f98852_5
- libflac=1.4.3=h59595ed_0
- libgcc-ng=12.2.0=h65d4601_19
- libgcrypt=1.10.3=hd590300_0
- libgd=2.3.3=h5aea950_4
- libgfortran-ng=13.2.0=h69a702a_0
- libgfortran5=13.2.0=ha4646dd_0
- libglib=2.78.2=h783c2da_0
- libgomp=12.2.0=h65d4601_19
- libgpg-error=1.47=h71f35ed_0
- libgrpc=1.58.2=he06187c_0
- libhwloc=2.9.1=hd6dc26d_0
- libiconv=1.17=h166bdaf_0
- libidn2=2.3.4=h166bdaf_0
- liblapack=3.9.0=20_linux64_openblas
- liblapacke=3.9.0=20_linux64_openblas
- liblief=0.12.3=h27087fc_0
- libllvm14=14.0.6=hcd5def8_4
- libllvm15=15.0.7=hadd5161_1
- libmamba=1.1.0=hde2b089_3
- libmambapy=1.1.0=py310h1428755_3
- libnghttp2=1.52.0=h61bc06f_0
- libnsl=2.0.0=h7f98852_0
- libntlm=1.4=h7f98852_1002
- libogg=1.3.4=h7f98852_1
- libopenblas=0.3.25=pthreads_h413a1c8_0
- libopus=1.3.1=h7f98852_1
- libpciaccess=0.17=h166bdaf_0
- libpng=1.6.39=h753d276_0
- libpq=15.1=h67c24c5_1
- libprotobuf=4.24.3=hf27288f_1
- libre2-11=2023.06.02=h7a70373_0
- librsvg=2.54.4=h7abd40a_0
- libsndfile=1.2.2=hc60ed4a_1
- libsolv=0.7.23=h3eb15da_0
- libsqlite=3.40.0=h753d276_0
- libssh2=1.10.0=hf14f497_3
- libstdcxx-ng=12.2.0=h46fd767_19
- libsystemd0=253=h8c4010b_1
- libtasn1=4.19.0=h166bdaf_0
- libtiff=4.5.0=h6adf6a1_2
- libtool=2.4.7=h27087fc_0
- libudev1=253=h0b41bf4_1
- libunistring=0.9.10=h7f98852_0
- libuuid=2.32.1=h7f98852_1000
- libva=2.18.0=h0b41bf4_0
- libvorbis=1.3.7=h9c3ff4c_0
- libvpx=1.11.0=h9c3ff4c_3
- libwebp=1.2.4=h1daa5a0_1
- libwebp-base=1.2.4=h166bdaf_0
- libxcb=1.13=h7f98852_1004
- libxkbcommon=1.5.0=h79f4944_1
- libxml2=2.10.3=hca2bb57_4
- libzlib=1.2.13=h166bdaf_4
- llvm-openmp=17.0.6=h4dfa4b3_0
- llvmlite=0.40.1=py310h1b8f574_0
- logical-unification=0.4.6=pyhd8ed1ab_0
- lz4-c=1.9.4=hcb278e6_0
- lzo=2.10=h516909a_1000
- mamba=1.1.0=py310h51d5547_3
- markupsafe=2.1.2=py310h1fa729e_0
- matplotlib=3.8.2=py310hff52083_0
- matplotlib-base=3.8.2=py310h62c0568_0
- matplotlib-inline=0.1.6=pyhd8ed1ab_0
- minikanren=1.0.3=pyhd8ed1ab_0
- mkl=2022.2.1=h84fe81f_16997
- mkl-service=2.4.0=py310h9263142_0
- ml_dtypes=0.3.1=py310hcc13569_2
- mpg123=1.32.3=h59595ed_0
- multidict=6.0.4=py310h1fa729e_0
- multipledispatch=0.6.0=py_0
- munkres=1.1.4=pyh9f0ad1d_0
- mysql-common=8.0.33=hf1915f5_6
- mysql-libs=8.0.33=hca2cd23_6
- ncurses=6.3=h27087fc_1
- ndg-httpsclient=0.5.1=py_1
- nettle=3.9.1=h7ab15ed_0
- nspr=4.35=h27087fc_0
- nss=3.89=he45b914_0
- numba=0.57.1=py310h0f6aa51_0
- numpy=1.24.4=py310ha4c1d20_0
- numpyro=0.13.2=pyhd8ed1ab_1
- openblas=0.3.25=pthreads_h7a3da1a_0
- openh264=2.3.1=hcb278e6_2
- openjpeg=2.5.0=hfec8fc6_2
- openldap=2.4.59=hc311a53_0
- openpyxl=3.1.2=py310h2372a71_1
- openssl=3.1.4=hd590300_0
- opt-einsum=3.3.0=hd8ed1ab_2
- opt_einsum=3.3.0=pyhc1e730c_2
- p11-kit=0.24.1=hc5aa10d_0
- packaging=23.0=pyhd8ed1ab_0
- pandas=1.5.3=py310h9b08913_1
- pango=1.50.14=hd33c08f_0
- parso=0.8.3=pyhd8ed1ab_0
- patch=2.7.6=h7f98852_1002
- patchelf=0.17.2=h58526e2_0
- patsy=0.5.4=pyhd8ed1ab_0
- pcre2=10.42=hcad00b1_0
- pexpect=4.8.0=pyh1a96a4e_2
- pickleshare=0.7.5=py_1003
- pillow=9.4.0=py310h023d228_1
- pip=23.3.1=pyhd8ed1ab_0
- pixman=0.42.2=h59595ed_0
- pkginfo=1.9.6=pyhd8ed1ab_0
- pluggy=1.0.0=pyhd8ed1ab_5
- psutil=5.9.4=py310h5764c6d_0
- pthread-stubs=0.4=h36c2ea0_1001
- ptyprocess=0.7.0=pyhd3deb0d_0
- pulseaudio=16.1=hcb278e6_3
- pulseaudio-client=16.1=h5195f5e_3
- pulseaudio-daemon=16.1=ha8d29e2_3
- pure_eval=0.2.2=pyhd8ed1ab_0
- py-lief=0.12.3=py310hd8f1fbe_0
- pyasn1=0.4.8=py_0
- pyasn1-modules=0.2.7=py_0
- pybind11-abi=4=hd8ed1ab_3
- pycosat=0.6.4=py310h5764c6d_1
- pycparser=2.21=pyhd8ed1ab_0
- pyopenssl=23.1.1=pyhd8ed1ab_0
- pyparsing=3.1.1=pyhd8ed1ab_0
- pyqt=5.15.7=py310hab646b1_3
- pyqt5-sip=12.11.0=py310heca2aa9_3
- pysocks=1.7.1=pyha2e5f31_6
- pytensor-base=2.18.1=py310hcc13569_0
- python=3.10.10=he550d4f_0_cpython
- python-dateutil=2.8.2=pyhd8ed1ab_0
- python-graphviz=0.20.1=pyh22cad53_0
- python-ldap=3.4.0=py310h1fa729e_3
- python-libarchive-c=4.0=py310hff52083_2
- python_abi=3.10=3_cp310
- pyyaml=6.0=py310h5764c6d_5
- qt-main=5.15.6=hafeba50_4
- re2=2023.06.02=h2873b5e_0
- readline=8.2=h8228510_1
- reproc=14.2.4=h0b41bf4_0
- reproc-cpp=14.2.4=hcb278e6_0
- ripgrep=13.0.0=h2f28480_2
- ruamel.yaml=0.17.21=py310h1fa729e_3
- ruamel.yaml.clib=0.2.7=py310h1fa729e_1
- s3fs=2021.7.0=pyhd8ed1ab_0
- scikit-learn=1.3.2=py310h1fdf081_1
- scipy=1.11.4=py310hb13e2d6_0
- setuptools=65.6.3=pyhd8ed1ab_0
- sip=6.7.12=py310hc6cd4ac_0
- six=1.16.0=pyh6c4a22f_0
- soupsieve=2.3.2.post1=pyhd8ed1ab_0
- stack_data=0.6.2=pyhd8ed1ab_0
- statsmodels=0.14.0=py310h1f7b6fc_2
- svt-av1=1.4.1=hcb278e6_0
- tbb=2021.9.0=hf52228f_0
- threadpoolctl=3.2.0=pyha21a80b_0
- tk=8.6.13=noxft_h4845f30_101
- toml=0.10.2=pyhd8ed1ab_0
- tomli=2.0.1=pyhd8ed1ab_0
- toolz=0.12.0=pyhd8ed1ab_0
- tqdm=4.65.0=pyhd8ed1ab_1
- traitlets=5.14.0=pyhd8ed1ab_0
- tzdata=2023b=h71feb2d_0
- tzlocal=5.2=py310hff52083_0
- unicodedata2=15.1.0=py310h2372a71_0
- watermark=2.4.3=pyhd8ed1ab_0
- wheel=0.40.0=pyhd8ed1ab_0
- wrapt=1.15.0=py310h1fa729e_0
- x264=1!164.3095=h166bdaf_2
- x265=3.5=h924138e_3
- xcb-util=0.4.0=h516909a_0
- xcb-util-image=0.4.0=h166bdaf_0
- xcb-util-keysyms=0.4.0=h516909a_0
- xcb-util-renderutil=0.3.9=h166bdaf_0
- xcb-util-wm=0.4.1=h516909a_0
- xkeyboard-config=2.38=h0b41bf4_0
- xorg-fixesproto=5.0=h7f98852_1002
- xorg-kbproto=1.0.7=h7f98852_1002
- xorg-libice=1.0.10=h7f98852_0
- xorg-libsm=1.2.3=hd9c2040_1000
- xorg-libx11=1.8.4=h0b41bf4_0
- xorg-libxau=1.0.11=hd590300_0
- xorg-libxdmcp=1.1.3=h7f98852_0
- xorg-libxext=1.3.4=h0b41bf4_2
- xorg-libxfixes=5.0.3=h7f98852_1004
- xorg-libxrender=0.9.10=h7f98852_1003
- xorg-renderproto=0.11.1=h7f98852_1002
- xorg-xextproto=7.3.0=h0b41bf4_1003
- xorg-xproto=7.0.31=h7f98852_1007
- xz=5.2.6=h166bdaf_0
- yaml=0.2.5=h7f98852_2
- yaml-cpp=0.7.0=h27087fc_2
- yarl=1.8.2=py310h5764c6d_0
- zipp=3.17.0=pyhd8ed1ab_0
- zlib=1.2.13=h166bdaf_4
- zstandard=0.19.0=py310hdeb6495_1
- zstd=1.5.5=hfc55251_0
- pip:
- alembic==1.10.2
- amqp==5.1.1
- anyio==3.6.2
- apache-airflow==2.5.2
- apache-airflow-flowitems==1.0.2
- apache-airflow-providers-amazon==7.3.0
- apache-airflow-providers-celery==3.1.0
- apache-airflow-providers-common-sql==1.3.4
- apache-airflow-providers-docker==3.5.1
- apache-airflow-providers-ftp==3.3.1
- apache-airflow-providers-http==4.2.0
- apache-airflow-providers-imap==3.1.1
- apache-airflow-providers-mysql==4.0.2
- apache-airflow-providers-slack==7.2.0
- apache-airflow-providers-sqlite==3.3.1
- apache-airflow-providers-ssh==3.5.0
- apispec==3.3.2
- argcomplete==3.0.5
- arviz==0.16.1
- asgiref==3.6.0
- asn1crypto==1.5.1
- avro-python3==1.10.2
- babel==2.12.1
- bcrypt==4.0.1
- betterproto==2.0.0b6
- billiard==3.6.4.0
- black==23.11.0
- bletl==1.4.1
- blinker==1.5
- boto3==1.26.104
- botocore==1.29.104
- cachelib==0.9.0
- cachetools==5.3.2
- calibr8==7.1.0
- cattrs==22.2.0
- celery==5.2.7
- certifi==2023.7.22
- charset-normalizer==2.0.12
- click==8.1.3
- click-didyoumean==0.3.0
- click-plugins==1.1.1
- click-repl==0.2.0
- clickclick==20.10.2
- cloudpickle==3.0.0
- colorlog==4.8.0
- configupdater==3.1.1
- connexion==2.14.2
- cron-descriptor==1.2.35
- croniter==1.3.8
- csaps==1.1.0
- dask==2023.12.0
- deprecated==1.2.13
- dill==0.3.6
- distributed==2023.12.0
- dnspython==2.3.0
- docker==6.0.1
- email-validator==1.3.1
- exceptiongroup==1.1.1
- fastprogress==1.0.3
- flask==2.2.3
- flask-appbuilder==4.1.4
- flask-babel==2.0.0
- flask-caching==2.0.2
- flask-jwt-extended==4.4.4
- flask-login==0.6.2
- flask-session==0.4.0
- flask-sqlalchemy==2.5.1
- flask-wtf==1.1.1
- flower==1.2.0
- fsspec==2023.12.1
- gittrail==0.1.1
- greenlet==2.0.2
- grpclib==0.4.6
- gunicorn==20.1.0
- h11==0.14.0
- h2==4.1.0
- h5netcdf==1.3.0
- h5py==3.10.0
- hagelkorn==1.2.3
- hpack==4.0.0
- httpcore==0.16.3
- httpx==0.23.3
- humanize==4.6.0
- hyperframe==6.0.1
- idna==3.3
- inflection==0.5.1
- iniconfig==2.0.0
- isort==5.12.0
- itsdangerous==2.1.2
- jsonpath-ng==1.5.3
- jsonschema==4.17.3
- kombu==5.2.4
- lazy-object-proxy==1.9.0
- ldap3==2.9.1
- linkify-it-py==2.0.0
- locket==1.0.0
- lockfile==0.12.2
- lxml==4.9.3
- mako==1.2.4
- markdown==3.4.3
- markdown-it-py==2.2.0
- marshmallow==3.19.0
- marshmallow-enum==1.5.1
- marshmallow-oneofschema==3.0.1
- marshmallow-sqlalchemy==0.26.1
- mcbackend==0.5.1
- mdit-py-plugins==0.3.5
- mdurl==0.1.2
- msgpack==1.0.7
- murefi==5.3.0
- mypy-boto3-appflow==1.26.78
- mypy-boto3-rds==1.26.102
- mypy-boto3-redshift-data==1.26.88
- mypy-extensions==1.0.0
- mysql-connector-python==8.0.32
- mysqlclient==2.1.1
- nest-asyncio==1.5.8
- paramiko==3.1.0
- partd==1.4.1
- pathspec==0.9.0
- peak-performance==0.6.4
- pendulum==2.1.2
- platformdirs==4.1.0
- ply==3.11
- prison==0.2.1
- prometheus-client==0.16.0
- prompt-toolkit==3.0.38
- protobuf==3.20.3
- psycopg2-binary==2.9.9
- pygments==2.14.0
- pyjwt==2.6.0
- pymc==5.10.0
- pynacl==1.5.0
- pyrff==2.0.2
- pyrsistent==0.19.3
- pytensor-federated==1.0.1
- pytest==7.4.3
- python-daemon==3.0.1
- python-dotenv==1.0.0
- python-nvd3==0.15.0
- python-slugify==8.0.1
- pytz==2022.1
- pytzdata==2020.1
- redis==3.5.3
- redshift-connector==2.0.910
- requests==2.31.0
- requests-toolbelt==0.10.1
- rfc3339-validator==0.1.4
- rfc3986==1.5.0
- rich==13.3.3
- robotools==1.8.0
- s3transfer==0.6.0
- scramp==1.4.4
- setproctitle==1.3.2
- slack-sdk==3.20.2
- sniffio==1.3.0
- sortedcontainers==2.4.0
- sqlalchemy==1.4.46
- sqlalchemy-jsonfield==1.0.1.post0
- sqlalchemy-redshift==0.8.13
- sqlalchemy-utils==0.40.0
- sqlparse==0.4.3
- sshtunnel==0.4.0
- stumpy==1.12.0
- tabulate==0.9.0
- tblib==3.0.0
- tenacity==8.2.2
- termcolor==2.2.0
- text-unidecode==1.3
- tornado==6.2
- tsfresh==0.20.1
- typing==3.7.4.3
- typing-extensions==4.1.0
- uc-micro-py==1.0.1
- unicodecsv==0.14.1
- urllib3==1.26.8
- vine==5.0.0
- watchtower==2.0.1
- wcwidth==0.2.6
- websocket-client==1.5.1
- werkzeug==2.2.3
- wtforms==3.0.1
- xarray==2023.11.0
- xarray-einstats==0.6.0
- zict==3.0.0 |
|
@lucianopaz does this make any sense to you? not interestingI added even more logging: A lot of compilation attempts fail with this error: |
|
@michaelosthege, can you manage to enter the container and look for the file called libgcc.so? It should be in there somewhere but for some weird reason the compiler doesn't know where to look for it. While you're at it, you could also try to look for /usr/lib64/libpthread_nonshared.a. It seems very strange to me that the linker cannot find either of these libraries. It looks slightly related to this old issue from pandas. Maybe you can apply the patches that the people suggested at the end? |
|
First I simplified my Dockerfile to make a MRE: FROM ubuntu:22.04
RUN apt-get update -yqq \
&& apt-get upgrade -yqq \
&& apt-get install -yqq --no-install-recommends \
ca-certificates \
git \
wget
# Install mamba (base environment will be used for everything)
ENV PATH="/opt/mamba/bin:${PATH}"
ARG PATH="/opt/mamba/bin:${PATH}"
RUN wget --quiet https://github.com/conda-forge/miniforge/releases/latest/download/Mambaforge-Linux-x86_64.sh -O ~/mambaforge.sh \
&& /bin/bash ~/mambaforge.sh -b -p /opt/mamba \
&& rm ~/mambaforge.sh \
&& echo ". /opt/mamba/etc/profile.d/mamba.sh" >> ~/.bashrc \
&& echo "mamba activate base" >> ~/.bashrc
RUN mkdir /dependencies
COPY environment.yml /dependencies/environment.yml
RUN mamba env update --file /dependencies/environment.yml --name base \
# Clean up to reduce the size of the resulting Docker image layer
&& mamba clean --all \
&& find /opt/mamba/ -type f,l -name '*.a' -delete \
&& find /opt/mamba/ -type f,l -name '*.pyc' -delete \
&& find /opt/mamba/ -type f,l -name '*.js.map' -delete \
&& rm -rf /opt/mamba/pkgschannels:
- conda-forge
dependencies:
- numpy==1.24.4
- pandas>=1.5.3,<2
- python-graphviz
- pip
- python>=3.10,<3.11
#- pymc==5.10.3 # enabling this line breaks it
- pip:
- pymc==5.10.3For testing: # check availability of relevant locales
import logging
from pathlib import Path
import arviz
import graphviz
import numpy
import pandas
import pymc
import pytensor
import xarray
logging.basicConfig(
format='%(levelname).1s [%(asctime)s] [%(name)s:%(lineno)d]: %(message)s', datefmt='%Y-%m-%d %H:%M:%S',
level=logging.DEBUG,
)
def test_pymc_sampling():
"""Checking that standard NUTS sampling works."""
with pymc.Model():
pymc.Normal("n")
pymc.sample(tune=10, draws=20, compute_convergence_checks=False)
print("✔ Can sample with NUTS.")
return
def test_pymc_graphviz():
"""Test the graphviz installation by plotting a PyMC model"""
with pymc.Model() as pmodel:
pymc.Normal("n")
graph = pymc.model_to_graphviz(pmodel)
graph.render(format="png", filename="modelgraph")
assert Path("modelgraph.png").exists()
graph.render(format="pdf", filename="modelgraph")
assert Path("modelgraph.pdf").exists()
# Clean up
Path("modelgraph").unlink()
Path("modelgraph.png").unlink()
Path("modelgraph.pdf").unlink()
print("🥳 Can print PyMC model graphs!")
return
def test_pymc_jax():
"""Testing if also JAX/numpyro can be used."""
import pymc.sampling_jax
with pymc.Model():
pymc.Normal("n")
pymc.sampling_jax.sample_numpyro_nuts(tune=10, draws=20)
print("🥳 Can run MCMC with JAX backend!")
return
if __name__ == "__main__":
test_pymc_sampling()
test_pymc_graphviz()
# Disabled because of dependency conflicts (as of 2023-12-15)
# test_pymc_jax()And a convenience script to run all of them: cls
docker image rm mre:local
docker build -t mre:local .
docker run --rm -v %cd%:/wd mre:local python /wd/test.py |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Description
We have a
Dockerfilebased onubuntu:22.04which creates a micromamba base environment and updates it with a buch of packages.Some (including internal) packages are pip-installed, but I was careful to avoid uninstalls/reinstalls/downgrades of any compilation/NumPy/blas-related dependencies.
This is the result of a
mamba listjust prior to running a test script:mamba list
The test script tries this:
and produces this error:
Yesterday I manually checked inside the image and found
pytensor.config.blas__ldflags == ''.At this point I'm out of ideas and Ricardo told me to tag @lucianopaz
What can I do to facilitate debugging?
The text was updated successfully, but these errors were encountered: