Pipenv fails to install [packages] if extras in old format are present

[makspll]

Issue description

stack overflow post: https://stackoverflow.com/questions/63539443/pipenv-install-does-not-install-everything-from-pipfile/63546581#63546581

I tried running pipenv install with the following pipfile:

[[source]]
url = "https://pypi.python.org/simple"
verify_ssl = true
name = "pypi"

[requires]
python_version = "3.7"

[packages]
Django = "*"
django-split-settings = "*"
python-dotenv = "*"
django-compressor = "*"
django-libsass = "*"
Brotli = "*"
django-htmlmin = "*"
dj-database-url = "*"
wagtail = "*"
wagtail-metadata = "*"
wagtail-blocks = "*"
psycopg2 = "*"
django-tz-detect = "*"
wagtailcodeblock = "*"
django-taggit = "*"
django-taggit-templatetags2 = "*"
django-fontawesome-5 = "*"
django-debug-toolbar = "*"
wagtail-robots = "*"
wand = "*"
gunicorn = "*"

[dev-packages]
pylint = "*"
django-debug-toolbar = "*"

[packages.whitenoise]
extras = [ "brotli",]

[packages.django-storages]
extras = [ "dropbox",]

Expected result

all packages in the Pipfile are installed

Actual result

only packages which are in the Pipfile in the following format:
[packages.packageName] extras = ["extraName",]
are installed.

as shown when running:

$ pipenv run pip list
Package         Version
--------------- -------
django-storages 1.9.1
pip             20.2.2
setuptools      49.6.0
wheel           0.35.1
whitenoise      5.2.0

Steps to replicate

Copy the given Pipfile to some directory, run pipenv install
only the extras will be installed.

Fix

Convert the packages in the old extra format to:
packageName = {extras = ["extraName"], version = "*"}

---

$ pipenv --support

Pipenv version: '2020.8.13'

Pipenv location: '/home/maks/.pyenv/versions/3.7.8/lib/python3.7/site-packages/pipenv'

Python location: '/home/maks/.pyenv/versions/3.7.8/bin/python3.7'

Python installations found:

• 3.8.2: /usr/bin/python3
• 3.8.2: /usr/bin/python3.8
• 3.8.2: /bin/python3
• 3.8.2: /bin/python3.8
• 3.7.8: /home/maks/.pyenv/versions/3.7.8/bin/python3
• 3.7.8: /home/maks/.pyenv/versions/3.7.8/bin/python3.7m
• 3.7.8: /home/maks/.pyenv/versions/3.7.8/bin/python3.7
• 3.7.8: /home/maks/.pyenv/versions/3.7.8/bin/python3

PEP 508 Information:

{'implementation_name': 'cpython',
 'implementation_version': '3.7.8',
 'os_name': 'posix',
 'platform_machine': 'x86_64',
 'platform_python_implementation': 'CPython',
 'platform_release': '5.4.0-42-generic',
 'platform_system': 'Linux',
 'platform_version': '#46-Ubuntu SMP Fri Jul 10 00:24:02 UTC 2020',
 'python_full_version': '3.7.8',
 'python_version': '3.7',
 'sys_platform': 'linux'}

System environment variables:

• SHELL
• SESSION_MANAGER
• PYENV_HOOK_PATH
• QT_ACCESSIBILITY
• COLORTERM
• PYENV_SHELL
• XDG_CONFIG_DIRS
• XDG_SESSION_PATH
• XDG_MENU_PREFIX
• GNOME_DESKTOP_SESSION_ID
• GTK_IM_MODULE
• LANGUAGE
• I3SOCK
• QT4_IM_MODULE
• SSH_AUTH_SOCK
• XMODIFIERS
• DESKTOP_SESSION
• SSH_AGENT_PID
• PYENV_VERSION
• PWD
• XDG_SESSION_DESKTOP
• LOGNAME
• XDG_SESSION_TYPE
• GPG_AGENT_INFO
• XAUTHORITY
• XDG_GREETER_DATA_DIR
• GDM_LANG
• HOME
• LANG
• LS_COLORS
• XDG_CURRENT_DESKTOP
• VTE_VERSION
• XDG_SEAT_PATH
• GNOME_TERMINAL_SCREEN
• CLUTTER_IM_MODULE
• PYENV_DIR
• LESSCLOSE
• XDG_SESSION_CLASS
• TERM
• LESSOPEN
• USER
• GNOME_TERMINAL_SERVICE
• DISPLAY
• SHLVL
• QT_IM_MODULE
• DESKTOP_AUTOSTART_ID
• XDG_RUNTIME_DIR
• COMPIZ_CONFIG_PROFILE
• PYENV_ROOT
• XDG_DATA_DIRS
• PATH
• GDMSESSION
• DBUS_SESSION_BUS_ADDRESS
• PIPENV_PYTHON
• OLDPWD
• PIP_DISABLE_PIP_VERSION_CHECK
• PYTHONDONTWRITEBYTECODE
• PIP_SHIMS_BASE_MODULE
• PIP_PYTHON_PATH
• PYTHONFINDER_IGNORE_UNSUPPORTED

Pipenv–specific environment variables:

• PIPENV_PYTHON: /home/maks/.pyenv/shims/python

Debug–specific environment variables:

• PATH: /home/maks/.pyenv/versions/3.7.8/bin:/home/maks/.pyenv/libexec:/home/maks/.pyenv/plugins/python-build/bin:/home/maks/.pyenv/shims:/home/maks/.pyenv/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
• SHELL: /bin/bash
• LANG: en_GB.UTF-8
• PWD: /home/maks/Git/personal-website

---

Contents of Pipfile ('/home/maks/Git/personal-website/Pipfile'):

[[source]]
url = "https://pypi.python.org/simple"
verify_ssl = true
name = "pypi"

[requires]
python_version = "3.7"

[packages]
Django = "*"
django-split-settings = "*"
python-dotenv = "*"
django-compressor = "*"
django-libsass = "*"
Brotli = "*"
django-htmlmin = "*"
dj-database-url = "*"
wagtail = "*"
wagtail-metadata = "*"
wagtail-blocks = "*"
psycopg2 = "*"
django-tz-detect = "*"
wagtailcodeblock = "*"
django-taggit = "*"
django-taggit-templatetags2 = "*"
django-fontawesome-5 = "*"
django-debug-toolbar = "*"
wagtail-robots = "*"
wand = "*"
gunicorn = "*"

[dev-packages]
pylint = "*"
django-debug-toolbar = "*"

[packages.whitenoise]
extras = [ "brotli",]

[packages.django-storages]
extras = [ "dropbox",]

Contents of Pipfile.lock ('/home/maks/Git/personal-website/Pipfile.lock'):

{
    "_meta": {
        "hash": {
            "sha256": "729acd086f631676263953529c931732010fe3bce1070129fe4c5a178c290023"
        },
        "pipfile-spec": 6,
        "requires": {
            "python_version": "3.7"
        },
        "sources": [
            {
                "name": "pypi",
                "url": "https://pypi.python.org/simple",
                "verify_ssl": true
            }
        ]
    },
    "default": {
        "django-storages": {
            "extras": [
                "dropbox"
            ]
        },
        "whitenoise": {
            "extras": [
                "brotli"
            ]
        }
    },
    "develop": {
        "asgiref": {
            "hashes": [
                "sha256:7e51911ee147dd685c3c8b805c0ad0cb58d360987b56953878f8c06d2d1c6f1a",
                "sha256:9fc6fb5d39b8af147ba40765234fa822b39818b12cc80b35ad9b0cef3a476aed"
            ],
            "markers": "python_version >= '3.5'",
            "version": "==3.2.10"
        },
        "astroid": {
            "hashes": [
                "sha256:2f4078c2a41bf377eea06d71c9d2ba4eb8f6b1af2135bec27bbbb7d8f12bb703",
                "sha256:bc58d83eb610252fd8de6363e39d4f1d0619c894b0ed24603b881c02e64c7386"
            ],
            "markers": "python_version >= '3.5'",
            "version": "==2.4.2"
        },
        "django": {
            "hashes": [
                "sha256:1a63f5bb6ff4d7c42f62a519edc2adbb37f9b78068a5a862beff858b68e3dc8b",
                "sha256:2d390268a13c655c97e0e2ede9d117007996db692c1bb93eabebd4fb7ea7012b"
            ],
            "markers": "python_version >= '3.6'",
            "version": "==3.1"
        },
        "django-debug-toolbar": {
            "hashes": [
                "sha256:eabbefe89881bbe4ca7c980ff102e3c35c8e8ad6eb725041f538988f2f39a943",
                "sha256:ff94725e7aae74b133d0599b9bf89bd4eb8f5d2c964106e61d11750228c8774c"
            ],
            "index": "pypi",
            "version": "==2.2"
        },
        "isort": {
            "hashes": [
                "sha256:60a1b97e33f61243d12647aaaa3e6cc6778f5eb9f42997650f1cc975b6008750",
                "sha256:d488ba1c5a2db721669cc180180d5acf84ebdc5af7827f7aaeaa75f73cf0e2b8"
            ],
            "markers": "python_version >= '3.6' and python_version < '4.0'",
            "version": "==5.4.2"
        },
        "lazy-object-proxy": {
            "hashes": [
                "sha256:0c4b206227a8097f05c4dbdd323c50edf81f15db3b8dc064d08c62d37e1a504d",
                "sha256:194d092e6f246b906e8f70884e620e459fc54db3259e60cf69a4d66c3fda3449",
                "sha256:1be7e4c9f96948003609aa6c974ae59830a6baecc5376c25c92d7d697e684c08",
                "sha256:4677f594e474c91da97f489fea5b7daa17b5517190899cf213697e48d3902f5a",
                "sha256:48dab84ebd4831077b150572aec802f303117c8cc5c871e182447281ebf3ac50",
                "sha256:5541cada25cd173702dbd99f8e22434105456314462326f06dba3e180f203dfd",
                "sha256:59f79fef100b09564bc2df42ea2d8d21a64fdcda64979c0fa3db7bdaabaf6239",
                "sha256:8d859b89baf8ef7f8bc6b00aa20316483d67f0b1cbf422f5b4dc56701c8f2ffb",
                "sha256:9254f4358b9b541e3441b007a0ea0764b9d056afdeafc1a5569eee1cc6c1b9ea",
                "sha256:9651375199045a358eb6741df3e02a651e0330be090b3bc79f6d0de31a80ec3e",
                "sha256:97bb5884f6f1cdce0099f86b907aa41c970c3c672ac8b9c8352789e103cf3156",
                "sha256:9b15f3f4c0f35727d3a0fba4b770b3c4ebbb1fa907dbcc046a1d2799f3edd142",
                "sha256:a2238e9d1bb71a56cd710611a1614d1194dc10a175c1e08d75e1a7bcc250d442",
                "sha256:a6ae12d08c0bf9909ce12385803a543bfe99b95fe01e752536a60af2b7797c62",
                "sha256:ca0a928a3ddbc5725be2dd1cf895ec0a254798915fb3a36af0964a0a4149e3db",
                "sha256:cb2c7c57005a6804ab66f106ceb8482da55f5314b7fcb06551db1edae4ad1531",
                "sha256:d74bb8693bf9cf75ac3b47a54d716bbb1a92648d5f781fc799347cfc95952383",
                "sha256:d945239a5639b3ff35b70a88c5f2f491913eb94871780ebfabb2568bd58afc5a",
                "sha256:eba7011090323c1dadf18b3b689845fd96a61ba0a1dfbd7f24b921398affc357",
                "sha256:efa1909120ce98bbb3777e8b6f92237f5d5c8ea6758efea36a473e1d38f7d3e4",
                "sha256:f3900e8a5de27447acbf900b4750b0ddfd7ec1ea7fbaf11dfa911141bc522af0"
            ],
            "markers": "python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3'",
            "version": "==1.4.3"
        },
        "mccabe": {
            "hashes": [
                "sha256:ab8a6258860da4b6677da4bd2fe5dc2c659cff31b3ee4f7f5d64e79735b80d42",
                "sha256:dd8d182285a0fe56bace7f45b5e7d1a6ebcbf524e8f3bd87eb0f125271b8831f"
            ],
            "version": "==0.6.1"
        },
        "pylint": {
            "hashes": [
                "sha256:bb4a908c9dadbc3aac18860550e870f58e1a02c9f2c204fdf5693d73be061210",
                "sha256:bfe68f020f8a0fece830a22dd4d5dddb4ecc6137db04face4c3420a46a52239f"
            ],
            "index": "pypi",
            "version": "==2.6.0"
        },
        "pytz": {
            "hashes": [
                "sha256:a494d53b6d39c3c6e44c3bec237336e14305e4f29bbf800b599253057fbb79ed",
                "sha256:c35965d010ce31b23eeb663ed3cc8c906275d6be1a34393a1d73a41febf4a048"
            ],
            "version": "==2020.1"
        },
        "six": {
            "hashes": [
                "sha256:30639c035cdb23534cd4aa2dd52c3bf48f06e5f4a941509c8bafd8ce11080259",
                "sha256:8b74bedcbbbaca38ff6d7491d76f2b06b3592611af620f8426e82dddb04a5ced"
            ],
            "markers": "python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2'",
            "version": "==1.15.0"
        },
        "sqlparse": {
            "hashes": [
                "sha256:022fb9c87b524d1f7862b3037e541f68597a730a8843245c349fc93e1643dc4e",
                "sha256:e162203737712307dfe78860cc56c8da8a852ab2ee33750e33aeadf38d12c548"
            ],
            "markers": "python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3'",
            "version": "==0.3.1"
        },
        "toml": {
            "hashes": [
                "sha256:926b612be1e5ce0634a2ca03470f95169cf16f939018233a670519cb4ac58b0f",
                "sha256:bda89d5935c2eac546d648028b9901107a595863cb36bae0c73ac804a9b4ce88"
            ],
            "version": "==0.10.1"
        },
        "typed-ast": {
            "hashes": [
                "sha256:0666aa36131496aed8f7be0410ff974562ab7eeac11ef351def9ea6fa28f6355",
                "sha256:0c2c07682d61a629b68433afb159376e24e5b2fd4641d35424e462169c0a7919",
                "sha256:249862707802d40f7f29f6e1aad8d84b5aa9e44552d2cc17384b209f091276aa",
                "sha256:24995c843eb0ad11a4527b026b4dde3da70e1f2d8806c99b7b4a7cf491612652",
                "sha256:269151951236b0f9a6f04015a9004084a5ab0d5f19b57de779f908621e7d8b75",
                "sha256:4083861b0aa07990b619bd7ddc365eb7fa4b817e99cf5f8d9cf21a42780f6e01",
                "sha256:498b0f36cc7054c1fead3d7fc59d2150f4d5c6c56ba7fb150c013fbc683a8d2d",
                "sha256:4e3e5da80ccbebfff202a67bf900d081906c358ccc3d5e3c8aea42fdfdfd51c1",
                "sha256:6daac9731f172c2a22ade6ed0c00197ee7cc1221aa84cfdf9c31defeb059a907",
                "sha256:715ff2f2df46121071622063fc7543d9b1fd19ebfc4f5c8895af64a77a8c852c",
                "sha256:73d785a950fc82dd2a25897d525d003f6378d1cb23ab305578394694202a58c3",
                "sha256:8c8aaad94455178e3187ab22c8b01a3837f8ee50e09cf31f1ba129eb293ec30b",
                "sha256:8ce678dbaf790dbdb3eba24056d5364fb45944f33553dd5869b7580cdbb83614",
                "sha256:aaee9905aee35ba5905cfb3c62f3e83b3bec7b39413f0a7f19be4e547ea01ebb",
                "sha256:bcd3b13b56ea479b3650b82cabd6b5343a625b0ced5429e4ccad28a8973f301b",
                "sha256:c9e348e02e4d2b4a8b2eedb48210430658df6951fa484e59de33ff773fbd4b41",
                "sha256:d205b1b46085271b4e15f670058ce182bd1199e56b317bf2ec004b6a44f911f6",
                "sha256:d43943ef777f9a1c42bf4e552ba23ac77a6351de620aa9acf64ad54933ad4d34",
                "sha256:d5d33e9e7af3b34a40dc05f498939f0ebf187f07c385fd58d591c533ad8562fe",
                "sha256:fc0fea399acb12edbf8a628ba8d2312f583bdbdb3335635db062fa98cf71fca4",
                "sha256:fe460b922ec15dd205595c9b5b99e2f056fd98ae8f9f56b888e7a17dc2b757e7"
            ],
            "markers": "implementation_name == 'cpython' and python_version < '3.8'",
            "version": "==1.4.1"
        },
        "wrapt": {
            "hashes": [
                "sha256:b62ffa81fb85f4332a4f609cab4ac40709470da05643a082ec1eb88e6d9b97d7"
            ],
            "version": "==1.12.1"
        }
    }
}