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base repository: pyro-ppl/numpyro
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base: 0.15.0
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head repository: pyro-ppl/numpyro
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compare: 0.15.1
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  • 19 commits
  • 109 files changed
  • 10 contributors

Commits on May 14, 2024

  1. add images (#1799)

    juanitorduz authored May 14, 2024
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  2. Partially verified

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  3. Add further entropy implementations. (#1800)

    * Add entropy for `Independent`, `Expanded`, and `Delta` distributions.
    
    * Fix `__repr__` for `SineSkewed`.
    
    * Add entropy for `InverseGamma` distribution.
    tillahoffmann authored May 14, 2024

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Commits on May 28, 2024

  1. Support multidimensional HSGP (numpyro.contrib.hsgp) (#1803)

    * wip(hsgp_nd): add eigen_index function, allow m to take Sequence[int]
    
    wip(hsgp_nd): test list input for m, make dim required arg
    
    wip(hsgp_nd): support batched eigenfunctions, swap dims for m and d
    
    * wip(hsgp_nd): support/test n-d approximations
    
    * doc(hsgp_nd): format ordered lists
    
    doc(hsgp_nd): polish contrib documentation
    
    rm TODO
    
    fix eigenindices docstring
    
    cleanup nb
    
    * fix(hsgp_nd): make python 3.9 happy
    
    * fix(hsgp_nd): make linter happy (space between license and imports)
    
    * fix(stochastic_volatility): legendHandles -> legend_handles
    
    looks like matplotlib snuck in a deprecation here
    
    * test(hsgp_nd): add tests for `_convert_ell` and `eigenindices`
    
    * test(hsgp_nd): specific test for eq 10
    brendancooley authored May 28, 2024
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Commits on Jun 1, 2024

  1. Copy the full SHA
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Commits on Jun 10, 2024

  1. fix(contrib.hsgp): convert matern spectral density from frequency dom…

    …ain (#1811)
    
    * fix(contrib.hsgp): convert matern spectral density to angular frequency
    
    * add scikit-learn to test extras
    
    * fix matern spectral density docstring
    
    * test args from jnp.array -> np.array
    
    * add ARRAY_TYPE, python 3.9 compatible isinstance check
    brendancooley authored Jun 10, 2024
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Commits on Jun 17, 2024

  1. example: multidimensional HSGP (#1801)

    * wip(hsgp_nd): initialize notebook with full gp and approx models
    
    wip(hsgp_nd): writeup results for baseline, add mcmc options
    
    wip(hsbp_nd): complete writeup
    
    docs(numpyro): add hsgp_nd_example
    
    wip(hsgp_nd): patch up example
    
    wip(hsgp_nd): cleanup/re-run nb
    
    wip(hsgp_nd): final cleanup
    
    * chore(hsgp_nd): ruff lint and fmt
    
    * fix(hsgp_nd): fix support comment
    
    * wip(hsgp_nd): debug delta between contrib and local implementations
    
    * example(hsgp_nd): rewrite docs to reference contrib module
    
    * example(hsgp_nd): clarify docs
    
    * add more verbiage and arviz plots
    
    * format and add trace plot for approximation
    
    * fix divergences
    
    * add numpyro install to top of nb
    brendancooley authored Jun 17, 2024
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Commits on Jun 22, 2024

  1. filter out tests waiting for next tfp release (#1817)

    * filter oout tests waiting for next tfp release
    
    * add warning mathc
    
    * fix warnings
    
    * put warnings up
    
    * move warning to top init
    
    * use tree_map
    
    * ignore yet another test
    juanitorduz authored Jun 22, 2024
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Commits on Jun 23, 2024

  1. Convert explicit looping to bit twiddling for nuts u-turn calculations (

    #1818)
    
    * convert looping to twiddling
    
    * convert looping to twiddling
    andrewdipper authored Jun 23, 2024
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  2. Make figure in AR2 example reproducible (#1816)

    * Add code to reproduce ar2 plot
    
    * use m_t for plot
    
    * make pre-commit happy
    
    * implement mean tracking for loop version
    
    * restore mean tracking in scan version
    damonbayer authored Jun 23, 2024
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Commits on Jun 24, 2024

  1. Memory reduction fixes for MCMC sampler (#1802)

    * memfixes
    
    * fix import
    
    * bugfix
    
    * wrap fn fix
    
    * remove rejit
    
    * fix format
    
    * fix compile behavior
    
    * fix parallel case
    
    * resolve map handling
    
    * fix stochastic_volatility
    
    * fix jit / dummy collection
    
    * fix cjit and donation
    
    * remove _body_fn_wrap
    andrewdipper authored Jun 24, 2024
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Commits on Jun 25, 2024

  1. Less than eq constaint (#1822)

    * chore: less than eq constraint
    
    * chore: unit tests for constraints and transforms
    Qazalbash authored Jun 25, 2024
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  2. Support vector lengthscales for RBF and Matern kernels (#1819)

    * Support vector lengthscales for RBF and Matern kernels
    
    * Use broadcast_shapes to align params
    
    * Remove union shorthand
    
    * Update test/contrib/hsgp/test_approximation.py
    
    Co-authored-by: Juan Orduz <juanitorduz@gmail.com>
    
    * Run make format
    
    * Remove union in isinstance check
    
    ---------
    
    Co-authored-by: Sam Anklesaria <anklesaria@utexs.edu>
    Co-authored-by: Juan Orduz <juanitorduz@gmail.com>
    3 people authored Jun 25, 2024
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Commits on Jun 26, 2024

  1. Update jax.tree_util.tree_map to jax.tree.map (#1821)

    * update jax.tree_util.tree_foo to jax.tree.foo
    
    * bump minimal jax version to 0.4.25, which supports jax.tree
    
    * fix lint issues
    
    * also fix deprecation warning of using a_min, a_max in jnp.clip
    fehiepsi authored Jun 26, 2024
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Commits on Jul 1, 2024

  1. Fixes random_flax_module with flax.linen.BatchNorm (#1823)

    * filter oout tests waiting for next tfp release
    
    * fix issue 1446
    
    * add feddback (not working)
    
    * feedbackl 2
    
    * default handler
    
    * rm prng_key from substitute
    
    * remove class from function
    juanitorduz authored Jul 1, 2024
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  3. Support UnpackTransform.inv via pack_fn (#1824)

    * add pack_fn to UnpackTransform for inverse
    
    * better pack_fn
    fehiepsi authored Jul 1, 2024
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Commits on Jul 2, 2024

  1. Allow to use NeuTra on models with plates (#1826)

    * allow to use NeuTra with plate
    
    * Fix typo in reparam.py
    fehiepsi authored Jul 2, 2024
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Commits on Jul 11, 2024

  1. Bump to 0.15.1 (#1830)

    fehiepsi authored Jul 11, 2024
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