Add jupyter book (#49)

* Add jupyter book

* fixes

Author: jan-janssen

.github/workflows/deploy.yml

@@ -0,0 +1,33 @@
+name: Deploy
+
+on:
+  push:
+    branches: [ main ]
+
+jobs:
+  build:
+    runs-on: ubuntu-latest
+    steps:
+    - uses: actions/checkout@v4
+    - uses: conda-incubator/setup-miniconda@v3
+      with:
+        auto-update-conda: true
+        python-version: "3.12"
+        environment-file: book/environment.yml
+        auto-activate-base: false
+    - name: Install Jupyterbook
+      shell: bash -l {0}
+      run: |
+        cp book/_config.yml .
+        cp book/_toc.yml .
+        cp book/*.md . 
+        jupyter-book build . --path-output public
+    - run: mv public/_build/html public_html
+    - run: touch public_html/.nojekyll
+    - name: Deploy 🚀
+      uses: JamesIves/github-pages-deploy-action@3.7.1
+      with:
+        GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+        BRANCH: gh-pages # The branch the action should deploy to.
+        FOLDER: public_html # The folder the action should deploy.
+        CLEAN: true

.github/workflows/pipeline.yml

@@ -89,4 +89,24 @@ jobs:
         papermill aiida_simple.ipynb aiida_simple_out.ipynb -k "python3"
         papermill jobflow_simple.ipynb jobflow_simple_out.ipynb -k "python3"
         papermill pyiron_base_simple.ipynb pyiron_base_simple_out.ipynb -k "python3"
-        papermill universal_workflow_simple.ipynb universal_workflow_simple_out.ipynb -k "python3"
+        papermill universal_workflow_simple.ipynb universal_workflow_simple_out.ipynb -k "python3"
+
+  book:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+      - uses: conda-incubator/setup-miniconda@v3
+        with:
+          auto-update-conda: true
+          python-version: "3.12"
+          environment-file: book/environment.yml
+          auto-activate-base: false
+      - name: Install Jupyterbook
+        shell: bash -l {0}
+        run: |
+          cp book/_config.yml .
+          cp book/_toc.yml .
+          cp book/*.md .
+          jupyter-book build . --path-output public
+      - run: mv public/_build/html public_html
+      - run: touch public_html/.nojekyll