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Conflict with biom-format 2.1.12 #279

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tillea opened this issue Jul 18, 2022 · 0 comments
Open

Conflict with biom-format 2.1.12 #279

tillea opened this issue Jul 18, 2022 · 0 comments

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@tillea
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tillea commented Jul 18, 2022

Bug Description

There are test suite errors when using biom-format 2.1.12-

Steps to reproduce the behavior

The Debian package of q2-types is running into errors in out CI infrastructure when running

py.test-3 --cov=q2_types

this results in the following error:

FAILED q2_types/feature_table/tests/test_transformer.py::TestTransformers::test_biom_table_to_biom_v210_format
FAILED q2_types/feature_table/tests/test_transformer.py::TestTransformers::test_biom_v100_format_to_biom_table
FAILED q2_types/feature_table/tests/test_transformer.py::TestTransformers::test_biom_v100_format_to_biom_v210_format
FAILED q2_types/feature_table/tests/test_transformer.py::TestTransformers::test_biom_v210_format_to_biom_table
================== 4 failed, 350 passed, 12 warnings in 5.20s ==================

You can see a complete build log here

Expected behavior

No failure in test suite.

Computation Environment

  • OS: Debian GNU Linux (unstable)
  • QIIME 2 Release 2022.2.0
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