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ENH: Adding new type called FeatureTable[Normalized] #339

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VinzentRisch opened this issue Jul 19, 2024 · 0 comments
Open

ENH: Adding new type called FeatureTable[Normalized] #339

VinzentRisch opened this issue Jul 19, 2024 · 0 comments

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@VinzentRisch
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Addition Description
When creating a FeatureTable[Frequency] by mapping reads to reference genes, the resulting data is total amount of reads that mapped to a gene. With this data it is impossible to make comparisons inside a sample, because of different gene lengths and it is also impossible to make comparisons between samples because of different total amount of reads per sample. To solve this issue I propose a new type called FeatureTable[Normalized] that will be the output of a new action that can normalize FeatureTable[Frequency] artifacts. There will be properties that indicate the specific normalization method that was used.

References
https://forum.qiime2.org/t/2024-07-03-group-meeting/30649/5

@github-project-automation github-project-automation bot moved this to Backlog in 2024.10 🎃 Jul 25, 2024
@lizgehret lizgehret moved this from Backlog to Changelog Needed in 2024.10 🎃 Aug 8, 2024
@lizgehret lizgehret moved this from Changelog Needed to Completed in 2024.10 🎃 Aug 15, 2024
@hagenjp hagenjp removed their assignment Sep 19, 2024
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