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add vsearch database search method #35

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gregcaporaso opened this issue Dec 5, 2017 · 1 comment
Open

add vsearch database search method #35

gregcaporaso opened this issue Dec 5, 2017 · 1 comment

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@gregcaporaso
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gregcaporaso commented Dec 5, 2017

Improvement Description
This is useful for running a BLAST-like search locally. For example, I recently wanted to get a report of the best matches in my reference database for some query sequences of interest. The vsearch command looks like the following:

vsearch --db 99-otus/dna-sequences.fasta \
  --usearch_global queries.fasta \
  --alnout out.aln \
  --blast6out out.bl6 \
  --id 0.0 \
  --maxaccepts 10 \
  --qmask none

Proposed Behavior
I would see this generating a qza containing the bl6 output, which could then be viewed with qiime metadata tabulate.

@gregcaporaso
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This came up on the forum here.

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