change flag

Author: sjanssen2

.github/workflows/qiita-plugin-ci.yml

@@ -35,7 +35,7 @@ jobs:
         shell: bash -l {0}
         run: |
           conda activate qiita-files
-          pytest --with-doctest --cov=qiita_files --cov-report=lcov
+          pytest --doctest-modules --cov=qiita_files --cov-report=lcov
 
   lint:
     runs-on: ubuntu-latest