Fix qiita ware (#2074)

* fix #1505

* improving some GUI stuff

* improving some GUI stuff - missing lines

* addressing all comments

* ready for review

* fix #1987

* initial commit

* requested changes

* fix filter job list

* Fixing server cert (#2051)

* fix get_studies

* flake8

* fix #503

* fix #2010

* fix #1913

* fix errors

* addressing @josenavas comment

* flake8

* fix #1010

* fix #1066 (#2058)

* addressing @josenavas comments

* fix #1961

* fix #1837

* Automatic jobs & new stats (#2057)

* fix #814, fix #1636

* fixing error in test-env

* fixing stats.html call

* adding img

* addressing @josenavas comments

* rm for loops

* addresssing @ElDeveloper comments

* generalizing this functionality

* fix #1816

* fix #1959

* addressing @josenavas comments

* addressing @josenavas comments

* fixing error

* fixed?

* addressing @josenavas comments

* addressing @wasade comments

* fix flake8

* generate biom and metadata release (#2066)

* initial commit

* adding portal

* addressing @josenavas comments

* pid -> qiita_artifact_id

* addressing @josenavas comments

* addressing @ElDeveloper comments

* rm 50.sql

* database changes to fix 969

* adding delete

* addressing @josenavas comments

* addressing @ElDeveloper comments

* duh!

* fix generate_biom_and_metadata_release (#2072)

* fix generate_biom_and_metadata_release

* addressing @ElDeveloper comment

* Removing qiita ware code that will not be used anymore

Author: josenavas

qiita_ware/analysis_pipeline.py

@@ -5,9 +5,7 @@
 #
 # The full license is in the file LICENSE, distributed with this software.
 # -----------------------------------------------------------------------------
-from .analysis_pipeline import RunAnalysis
 from qiita_ware.commands import submit_EBI, submit_VAMPS
-from qiita_db.analysis import Analysis
 
 
 def submit_to_ebi(preprocessed_data_id, submission_type):
@@ -20,16 +18,6 @@ def submit_to_VAMPS(preprocessed_data_id):
     return submit_VAMPS(preprocessed_data_id)
 
 
-def run_analysis(analysis_id, commands, comm_opts=None,
-                 rarefaction_depth=None, merge_duplicated_sample_ids=False,
-                 **kwargs):
-    """Run an analysis"""
-    analysis = Analysis(analysis_id)
-    ar = RunAnalysis(**kwargs)
-    return ar(analysis, commands, comm_opts, rarefaction_depth,
-              merge_duplicated_sample_ids)
-
-
 def create_raw_data(artifact_type, prep_template, filepaths, name=None):
     """Creates a new raw data